Pre_GI: BLASTP Hits

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Query: NC_003062:50756:70722 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Start: 70722, End: 70973, Length: 252

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003304:51048:709237092371174252Agrobacterium tumefaciens str. C58 chromosome circular, completeglutaredoxin protein1e-42171
NC_015183:51500:712797127971500222Agrobacterium sp. H13-3 chromosome, complete genomeglutaredoxin protein1e-34144
NC_015588:2468207:248399624839962484238243Isoptericola variabilis 225 chromosome, complete genomeglutaredoxin-like protein NrdH4e-26116
NC_011886:2369980:238299123829912383236246Arthrobacter chlorophenolicus A6, complete genomeglutaredoxin-like protein NrdH2e-24110
NC_020064:3609844:365298136529813653217237Serratia marcescens FGI94, complete genomeribonucleoside-diphosphate reductase class Ib glutaredoxin subunit4e-24109
NC_014550:2013422:202734720273472027577231Arthrobacter arilaitensis Re117, complete genomeglutaredoxin electron transport component NrdH8e-24108
NC_014151:449732:476220476220476465246Cellulomonas flavigena DSM 20109 chromosome, complete genomeglutaredoxin-like protein NrdH9e-24108
NC_014811:166389:175826175826176071246Mycobacterium sp. Spyr1 plasmid pMSPYR101, complete sequenceribonucleoside-diphosphate reductase class Ib glutaredoxin subunit5e-23106
NC_008703:31500:413134131341558246Mycobacterium sp. KMS plasmid pMKMS01, complete sequenceGlutaredoxin-like protein NrdH5e-23106
NC_014550:3377834:340606534060653406289225Arthrobacter arilaitensis Re117, complete genomeglutaredoxin electron transport component NrdH7e-23105
NC_015514:3911655:392362839236283923873246Cellulomonas fimi ATCC 484 chromosome, complete genomeglutaredoxin-like protein NrdH1e-22104
NC_015671:3211972:322400232240023224250249Cellvibrio gilvus ATCC 13127 chromosome, complete genomeglutaredoxin-like protein NrdH2e-22104
NC_012803:1117875:112914011291401129385246Micrococcus luteus NCTC 2665, complete genomeribonucleoside-diphosphate reductase class Ib glutaredoxin subunit4e-22103
NC_010545:1729161:173351417335141733744231Corynebacterium urealyticum DSM 7109, complete genomeglutaredoxin-like protein NrdH4e-22103
NC_014246:676570:701067701067701312246Mobiluncus curtisii ATCC 43063 chromosome, complete genomeNrdH family redoxin1e-21101
NC_012669:96966:101916101916102167252Beutenbergia cavernae DSM 12333, complete genomeglutaredoxin-like protein NrdH1e-1995.1
NC_016932:1791868:180538318053831805616234Corynebacterium pseudotuberculosis 316 chromosome, complete genomeglutaredoxin-like protein nrdH1e-1995.1
NC_017300:1833772:183377218337721834005234Corynebacterium pseudotuberculosis 1002 chromosome, completeGlutaredoxin-like protein nrdH1e-1995.1
NC_006361:4098469:413981241398124140054243Nocardia farcinica IFM 10152, complete genomeputative glutaredoxin2e-1787.4
NC_010694:1052722:105526010552601055502243Erwinia tasmaniensis, complete genomePutative glutaredoxin6e-1682.8
NC_012759:2633949:268455726845572684802246Escherichia coli BW2952 chromosome, complete genomeglutaredoxin-like protein4e-1476.6
NC_000913:2746886:279874527987452798990246Escherichia coli K12, complete genomeglutaredoxin-like protein4e-1476.6
AC_000091:2747520:279937927993792799624246Escherichia coli W3110 DNA, complete genomeglutaredoxin-like protein4e-1476.6
NC_013364:3339768:336433633643363364581246Escherichia coli O111:H- str. 11128, complete genomeglutaredoxin-like protein9e-1475.5
NC_016642:2440070:246491124649112465045135Pseudovibrio sp. FO-BEG1 chromosome, complete genomeglutaredoxin-like protein nrdH8e-1165.9
NC_015859:952500:974523974523974768246Corynebacterium variabile DSM 44702 chromosome, complete genomeglutaredoxin-like protein1e-1065.5
NC_014246:57021:745447454474918375Mobiluncus curtisii ATCC 43063 chromosome, complete genomeNrdH family redoxin3e-1063.9
NC_008537:12500:227452274523011267Arthrobacter sp. FB24 plasmid 1, complete sequenceglutaredoxin7e-1062.4
NC_013521:3204250:322738032273803228237858Sanguibacter keddieii DSM 10542, complete genomehypothetical protein4e-0856.6
NC_013174:2455420:246627324662732466524252Jonesia denitrificans DSM 20603, complete genomeglutaredoxin1e-0755.1
NC_013174:2321000:233274023327402332991252Jonesia denitrificans DSM 20603, complete genomeglutaredoxin1e-0755.1