Some Help

Query: NC_002950:353549 Porphyromonas gingivalis W83, complete genome

Start: 353549, End: 378599, Length: 25051

Host Lineage: Porphyromonas gingivalis; Porphyromonas; Porphyromonadaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This strain (also known as HG66) is virulent in a mouse model and has been extensively studied. It was originally isolated by H. Werner in the 1950s in Bonn, Germany, from an unknown human infection. Associated with severe and chronic periodontal disease. This organism is associated with severe and chronic periodontal (tissues surrounding and supporting the tooth) diseases. Progression of the disease is caused by colonization by this organism in an anaerobic environment in host tissues and severe progression results in loss of the tissues supporting the tooth and eventually loss of the tooth itself. The black pigmentation characteristic of this bacterium comes from iron acquisition that does not use the typical siderophore system of other bacteria but accumulates hemin.Peptides appear to be the predominant carbon and energy source of this organism, perhaps in keeping with its ability to destroy host tissue. Oxygen tolerance systems play a part in establishment of the organism in the oral cavity, including a superoxide dismutase. Pathogenic factors include extracellular adhesins that mediate interactions with other bacteria as well as the extracellular matrix, and a host of degradative enzymes that are responsible for tissue degradation and spread of the organism including the gingipains, which are trypsin-like cysteine proteases.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010729:1818500*1818500183909920600Porphyromonas gingivalis ATCC 33277, complete genome021050BLASTN svgBLASTP svg
NC_015571:1495286*1495286151559920314Porphyromonas gingivalis TDC60, complete genome018030BLASTN svgBLASTP svg
NC_006347:3638165*3638165365637318209Bacteroides fragilis YCH46, complete genome2e-41178BLASTN svgBLASTP svg
NC_003228:3545811*3545811356472818918Bacteroides fragilis NCTC 9343, complete genome2e-41178BLASTN svgBLASTP svg
NC_014933:2240000*2240000226386823869Bacteroides helcogenes P 36-108 chromosome, complete genome4e-36161BLASTN svgBLASTP svg
NC_015556:51564151564153855622916Pseudomonas fulva 12-X chromosome, complete genome6e-23117BLASTN svgBLASTP svg
NC_002937:1634287*1634287165975925473Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete2e-1695.6BLASTN svgBLASTP svg
NC_008702:1094663*1094663111848823826Azoarcus sp. BH72, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010729:13852171385217140844823232Porphyromonas gingivalis ATCC 33277, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_006087:676318*67631869499818681Leifsonia xyli subsp. xyli str. CTCB07, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_015571:722815*72281574581723003Porphyromonas gingivalis TDC60, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008751:1851358*1851358187328321926Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_011978:975333*975333100082825496Thermotoga neapolitana DSM 4359, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015571:440605*44060546793427330Porphyromonas gingivalis TDC60, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015571:10657751065775108656820794Porphyromonas gingivalis TDC60, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_002950:155873*15587318325427382Porphyromonas gingivalis W83, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_013730:1572889*1572889159761124723Spirosoma linguale DSM 74, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010729:1344903*1344903136284917947Porphyromonas gingivalis ATCC 33277, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_002950:19811551981155200431123157Porphyromonas gingivalis W83, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015571:168617*16861719730428688Porphyromonas gingivalis TDC60, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_021177:5697210*5697210572187724668Streptomyces fulvissimus DSM 40593, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_016027:2047954*2047954211021762264Gluconacetobacter xylinus NBRC 3288, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009952:3596399*3596399364016143763Dinoroseobacter shibae DFL 12, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013715:14459591445959146809922141Rothia mucilaginosa DY-18, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010729:265791*26579129310327313Porphyromonas gingivalis ATCC 33277, complete genome3e-0661.9BLASTN svgBLASTP svg