Pre_GI: BLASTN Hits

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Query: NC_002947:6152500 Pseudomonas putida KT2440, complete genome

Start: 6152500, End: 6185499, Length: 33000

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was derived from a toluene-degrading isolate, Pseudomonas arvilla strain mt-2 (renamed Pseudomonas putida mt-2), by loss of its plasmid. Common environmental bacterium. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009512:59209605920960595518534226Pseudomonas putida F1, complete genome028480BLASTN svgBLASTP svg
NC_015379:90890490890497110662203Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,0991BLASTN svgBLASTP svg
NC_015379:25750002575000259943424435Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,0991BLASTN svgBLASTP svg
NC_012660:57932005793200583260939410Pseudomonas fluorescens SBW25 chromosome, complete genome0785BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome0785BLASTN svgBLASTP svg
NC_007384:40950164095016412229027275Shigella sonnei Ss046, complete genome0777BLASTN svgBLASTP svg
NC_012660:2045398*2045398210849663099Pseudomonas fluorescens SBW25 chromosome, complete genome0769BLASTN svgBLASTP svg
NC_002516:6255854*6255854627999924146Pseudomonas aeruginosa PAO1, complete genome0743BLASTN svgBLASTP svg
NC_007005:5500196*5500196552713626941Pseudomonas syringae pv. syringae B728a, complete genome0688BLASTN svgBLASTP svg
NC_012560:5338707*5338707537299934293Azotobacter vinelandii DJ, complete genome0662BLASTN svgBLASTP svg
NC_008463:4566976*4566976460307636101Pseudomonas aeruginosa UCBPP-PA14, complete genome01316BLASTN svgBLASTP svg
NC_015740:45083754508375452814119767Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete01461BLASTN svgBLASTP svg
NC_015733:5955467*5955467598799932533Pseudomonas putida S16 chromosome, complete genome019660BLASTN svgBLASTP svg
NC_010501:5735656*5735656577333937684Pseudomonas putida W619, complete genome017540BLASTN svgBLASTP svg
NC_007492:6372900*6372900643584362944Pseudomonas fluorescens PfO-1, complete genome06712BLASTN svgBLASTP svg
NC_007005:60567656056765608605229288Pseudomonas syringae pv. syringae B728a, complete genome06292BLASTN svgBLASTP svg
NC_002947:49943354994335504935655022Pseudomonas putida KT2440, complete genome04724BLASTN svgBLASTP svg
NC_010501:30000300007042840429Pseudomonas putida W619, complete genome04325BLASTN svgBLASTP svg
NC_002947:4484824*4484824451609931276Pseudomonas putida KT2440, complete genome03479BLASTN svgBLASTP svg
NC_008463:52469545246954530671059757Pseudomonas aeruginosa UCBPP-PA14, complete genome02878BLASTN svgBLASTP svg
NC_008027:58427405842740587100528266Pseudomonas entomophila L48, complete genome02220BLASTN svgBLASTP svg
NC_012560:5276000*5276000530340327404Azotobacter vinelandii DJ, complete genome2e-171611BLASTN svgBLASTP svg
NC_021150:5234000*5234000526129527296Azotobacter vinelandii CA6, complete genome2e-171611BLASTN svgBLASTP svg
NC_012660:26849812684981271787932899Pseudomonas fluorescens SBW25 chromosome, complete genome3e-155557BLASTN svgBLASTP svg
NC_015733:3736104*37361043837697101594Pseudomonas putida S16 chromosome, complete genome9e-143515BLASTN svgBLASTP svg
NC_015572:49164304916430495009933670Methylomonas methanica MC09 chromosome, complete genome7e-122446BLASTN svgBLASTP svg
NC_010501:36715173671517370459933083Pseudomonas putida W619, complete genome5e-98367BLASTN svgBLASTP svg
NC_007005:830467*83046785407423608Pseudomonas syringae pv. syringae B728a, complete genome3e-68268BLASTN svgBLASTP svg
NC_005966:159232*15923218289723666Acinetobacter sp. ADP1, complete genome5e-55224BLASTN svgBLASTP svg
NC_002947:41675004167500424373376234Pseudomonas putida KT2440, complete genome5e-55224BLASTN svgBLASTP svg
NC_020209:19495001949500197652927030Pseudomonas poae RE*1-1-14, complete genome3e-50208BLASTN svgBLASTP svg
NC_002488:1099975*1099975114540245428Xylella fastidiosa 9a5c, complete genome1e-39172BLASTN svgBLASTP svg
NC_020209:39737639737645309955724Pseudomonas poae RE*1-1-14, complete genome1e-36163BLASTN svgBLASTP svg
NC_018691:3525430*3525430358162756198Alcanivorax dieselolei B5 chromosome, complete genome6e-36161BLASTN svgBLASTP svg
NC_018691:18227311822731185319130461Alcanivorax dieselolei B5 chromosome, complete genome6e-36161BLASTN svgBLASTP svg
NC_018691:1322389*1322389134428821900Alcanivorax dieselolei B5 chromosome, complete genome6e-36161BLASTN svgBLASTP svg
NC_015222:386000*38600040759921600Nitrosomonas sp. AL212 chromosome, complete genome8e-29137BLASTN svgBLASTP svg
NC_014752:131994*13199415436422371Neisseria lactamica ST-640, complete genome8e-29137BLASTN svgBLASTP svg
NC_015565:27365002736500277293936440Desulfotomaculum carboxydivorans CO-1-SRB chromosome, complete1e-27133BLASTN svgBLASTP svg
NC_015379:2417312*2417312246459947288Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,3e-25125BLASTN svgBLASTP svg
NC_002947:737924*73792476633928416Pseudomonas putida KT2440, complete genome1e-24123BLASTN svgBLASTP svg
NC_003295:19935419935423823938886Ralstonia solanacearum GMI1000, complete genome1e-24123BLASTN svgBLASTP svg
NC_005773:4028500*4028500405209923600Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-24123BLASTN svgBLASTP svg
NC_010804:78222278222281165029429Burkholderia multivorans ATCC 17616 chromosome 1, complete1e-24123BLASTN svgBLASTP svg
NC_020209:47504*4750412622978726Pseudomonas poae RE*1-1-14, complete genome5e-24121BLASTN svgBLASTP svg
NC_015458:33289053328905335692528021Pusillimonas sp. T7-7 chromosome, complete genome1e-21113BLASTN svgBLASTP svg
NC_006677:1431500*1431500145622224723Gluconobacter oxydans 621H, complete genome1e-21113BLASTN svgBLASTP svg
NC_014323:50510415051041507664325603Herbaspirillum seropedicae SmR1 chromosome, complete genome5e-21111BLASTN svgBLASTP svg
NC_009649:16907169074359926693Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,2e-20109BLASTN svgBLASTP svg
NC_015379:46303674630367466559935233Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,2e-20109BLASTN svgBLASTP svg
NC_020260:88230788230791401031704Cronobacter sakazakii Sp291, complete genome2e-20109BLASTN svgBLASTP svg
NC_019673:81143768114376813609921724Saccharothrix espanaensis DSM 44229 complete genome7e-20107BLASTN svgBLASTP svg
NC_004757:230541*23054125274022200Nitrosomonas europaea ATCC 19718, complete genome1e-18103BLASTN svgBLASTP svg
NC_014210:397922*39792241759919678Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,2e-1799.6BLASTN svgBLASTP svg
NC_013714:22038542203854222231018457Bifidobacterium dentium Bd1, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_008554:3177723*3177723320256524843Syntrophobacter fumaroxidans MPOB, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_010407:20384992038499205674718249Clavibacter michiganensis subsp. sepedonicus chromosome, complete1e-1593.7BLASTN svgBLASTP svg
NC_015589:37118213711821375793046110Desulfotomaculum ruminis DSM 2154 chromosome, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_018720:18782011878201190278524585Bifidobacterium asteroides PRL2011 chromosome, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_013203:1447340*1447340147021422875Atopobium parvulum DSM 20469, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_013093:71746367174636719886524230Actinosynnema mirum DSM 43827, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_015458:2614108*2614108264388729780Pusillimonas sp. T7-7 chromosome, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_014363:114239*11423917409959861Olsenella uli DSM 7084 chromosome, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_004578:63347356334735636397929245Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_018750:5399316*5399316541712617811Streptomyces venezuelae ATCC 10712, complete genome7e-1487.7BLASTN svgBLASTP svg
NC_021177:5697210*5697210572187724668Streptomyces fulvissimus DSM 40593, complete genome7e-1487.7BLASTN svgBLASTP svg
NC_014733:2851984*2851984287799926016Methylovorus sp. MP688 chromosome, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_008009:5139896*5139896517800338108Acidobacteria bacterium Ellin345, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_015422:3184823*3184823320638321561Alicycliphilus denitrificans K601 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_015422:28582282858228292680368576Alicycliphilus denitrificans K601 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_014910:19125521912552193924626695Alicycliphilus denitrificans BC chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_014910:1591003*1591003161459423592Alicycliphilus denitrificans BC chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_011883:2031222*2031222205221920998Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,4e-1281.8BLASTN svgBLASTP svg
NC_011992:1234610*1234610125759922990Acidovorax ebreus TPSY, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_013715:14459591445959146809922141Rothia mucilaginosa DY-18, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_014910:75519275519280336548174Alicycliphilus denitrificans BC chromosome, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_014963:40919104091910411615324244Terriglobus saanensis SP1PR4 chromosome, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_010512:10155571015557104522129665Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence2e-1179.8BLASTN svgBLASTP svg
NC_007517:16766041676604171020033597Geobacter metallireducens GS-15, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_007005:45158534515853454582229970Pseudomonas syringae pv. syringae B728a, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_004722:5194000*5194000525118457185Bacillus cereus ATCC 14579, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_003997:5032969*5032969507209939131Bacillus anthracis str. Ames, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_003909:4996783*4996783505271855936Bacillus cereus ATCC 10987, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_002927:5327094*5327094535399926906Bordetella bronchiseptica RB50, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_005957:5037499*5037499507811440616Bacillus thuringiensis serovar konkukian str. 97-27, complete7e-1177.8BLASTN svgBLASTP svg
NC_006274:50858605085860510874322884Bacillus cereus E33L, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_007530:5033095*5033095507221139117Bacillus anthracis str. 'Ames Ancestor', complete genome7e-1177.8BLASTN svgBLASTP svg
NC_008600:5046000*5046000510070354704Bacillus thuringiensis str. Al Hakam, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_011772:5158680*5158680520959950920Bacillus cereus G9842, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_012472:50551845055184507809922916Bacillus cereus 03BB102, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_014335:49695494969549499246722919Bacillus cereus biovar anthracis str. CI chromosome, complete7e-1177.8BLASTN svgBLASTP svg
NC_005125:2366778*2366778239059123814Gloeobacter violaceus PCC 7421, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_003919:4568892*4568892459309924208Xanthomonas axonopodis pv. citri str. 306, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_007508:4593446*4593446461871425269Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_010717:4851000*4851000487555824559Xanthomonas oryzae pv. oryzae PXO99A, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_011768:4571869*4571869459528523417Desulfatibacillum alkenivorans AK-01, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_007908:12521891252189127831426126Rhodoferax ferrireducens T118, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_007908:33639023363902338735723456Rhodoferax ferrireducens T118, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_008618:1804610*1804610183073726128Bifidobacterium adolescentis ATCC 15703, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_009092:4585784*4585784461549929716Shewanella loihica PV-4, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_010645:3720501*3720501374549924999Bordetella avium 197N, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_015458:2998000*2998000302249324494Pusillimonas sp. T7-7 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_013037:55878025587802561018522384Dyadobacter fermentans DSM 18053, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010995:45251194525119455888733769Cellvibrio japonicus Ueda107, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_002505:514732*51473255228437553Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete6e-0867.9BLASTN svgBLASTP svg
NC_008319:20077522007752203322125470Synechococcus sp. CC9311, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_009052:50899635089963511024820286Shewanella baltica OS155, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_010296:54000540007637922380Microcystis aeruginosa NIES-843, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_012660:4734363*4734363475525820896Pseudomonas fluorescens SBW25 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_019903:3537545*3537545356034222798Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,6e-0867.9BLASTN svgBLASTP svg
NC_002607:332233227474271421Halobacterium sp. NRC-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008825:564392*56439259156627175Methylibium petroleiphilum PM1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009512:30684953068495308873620242Pseudomonas putida F1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010364:332233227888275561Halobacterium salinarum R1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015696:517941*51794157358855648Francisella sp. TX077308 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007516:1974500*1974500199561621117Synechococcus sp. CC9605, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_007951:4608560*4608560463659128032Burkholderia xenovorans LB400 chromosome 1, complete sequence1e-0663.9BLASTN svgBLASTP svg
NC_009138:31535763153576318147527900Herminiimonas arsenicoxydans, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_012108:3965433*3965433398469319261Desulfobacterium autotrophicum HRM2, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015942:30902753090275311959929325Acidithiobacillus ferrivorans SS3 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015953:3684065*3684065371159927535Streptomyces sp. SirexAA-E chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_009512:27783277836731639534Pseudomonas putida F1, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_010501:34483893448389347837429986Pseudomonas putida W619, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_010729:265791*26579129310327313Porphyromonas gingivalis ATCC 33277, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_015167:1154497*1154497118273428238Cellulophaga lytica DSM 7489 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_015571:440605*44060546793427330Porphyromonas gingivalis TDC60, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_015977:3324000*3324000334644022441Roseburia hominis A2-183 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_002950:155873*15587318325427382Porphyromonas gingivalis W83, complete genome4e-0661.9BLASTN svgBLASTP svg