Query: NC_002940:1234410 Haemophilus ducreyi 35000HP, complete genome
Start: 1234410, End: 1258029, Length: 23620
Host Lineage: Haemophilus ducreyi; Haemophilus; Pasteurellaceae; Pasteurellales; Proteobacteria; Bacteria
General Information: This strain is a human passage derivative of Haemophilus ducreyi strain 35000 that is serum-resistant. Causative agent of chancroid. A group of organisms that are either obligate parasites or commensal organisms found in animal mucous membranes. Almost all species require the presence of important growth factors found in the blood of their hosts, including either X factor (protoporphyrin IX or heme) or V factor (nicotinamide adenine dinucleotide (NAD or NADP)). This organism is an obligate human pathogen that causes the sexually transmitted disease chancroid (ulcer of the genital region) and it enhances the transmission of HIV (which enhances Haemophilus ducreyi transmission in turn). This organism is an apparent extracellular pathogen that resists phagocytosis. Some of the virulence factors include an outer membrane serum resistance protein, as well as two toxins, cytolethal distending toxin (CDT) and hemolysin, both of which contribute to tissue destruction.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_002940:919175* | 919175 | 942975 | 23801 | Haemophilus ducreyi 35000HP, complete genome | 0 | 12260 | BLASTN svg | BLASTP svg |
NC_015964:1389628* | 1389628 | 1409190 | 19563 | Haemophilus parainfluenzae T3T1, complete genome | 4e-144 | 519 | BLASTN svg | BLASTP svg |
NC_013416:1091432* | 1091432 | 1109614 | 18183 | Aggregatibacter actinomycetemcomitans D11S-1, complete genome | 2e-35 | 159 | BLASTN svg | BLASTP svg |
NC_012913:2074126 | 2074126 | 2093848 | 19723 | Aggregatibacter aphrophilus NJ8700, complete genome | 9e-31 | 143 | BLASTN svg | BLASTP svg |
NC_013456:3011518 | 3011518 | 3034728 | 23211 | Vibrio sp. Ex25 chromosome 1, complete genome | 8e-22 | 113 | BLASTN svg | BLASTP svg |
NC_005126:3204980 | 3204980 | 3227484 | 22505 | Photorhabdus luminescens subsp. laumondii TTO1, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
NC_006370:847204 | 847204 | 868125 | 20922 | Photobacterium profundum SS9 chromosome 1, complete sequence | 1e-17 | 99.6 | BLASTN svg | BLASTP svg |
NC_012214:1212616 | 1212616 | 1236250 | 23635 | Erwinia pyrifoliae Ep1/96, complete genome | 1e-17 | 99.6 | BLASTN svg | BLASTP svg |
NC_012917:3378759 | 3378759 | 3397047 | 18289 | Pectobacterium carotovorum subsp. carotovorum PC1, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_012912:1295653 | 1295653 | 1318624 | 22972 | Dickeya zeae Ech1591, complete genome | 8e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_020063:1194000 | 1194000 | 1216762 | 22763 | Enterobacteriaceae bacterium strain FGI 57, complete genome | 5e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_012913:2189862* | 2189862 | 2215359 | 25498 | Aggregatibacter aphrophilus NJ8700, complete genome | 5e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_009800:2651730 | 2651730 | 2676291 | 24562 | Escherichia coli HS, complete genome | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_007712:2978000 | 2978000 | 3000203 | 22204 | Sodalis glossinidius str. 'morsitans', complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_010634:3250810 | 3250810 | 3268641 | 17832 | Yersinia pseudotuberculosis PB1/+, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_006155:3333303 | 3333303 | 3351181 | 17879 | Yersinia pseudotuberculosis IP 32953, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_002663:62500 | 62500 | 86531 | 24032 | Pasteurella multocida subsp. multocida str. Pm70, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_018697:618832 | 618832 | 643385 | 24554 | Cycloclasticus sp. P1 chromosome, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_013956:3181421 | 3181421 | 3203443 | 22023 | Pantoea ananatis LMG 20103 chromosome, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_004347:3437369 | 3437369 | 3458709 | 21341 | Shewanella oneidensis MR-1, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_020064:3517500 | 3517500 | 3541335 | 23836 | Serratia marcescens FGI94, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_014500:3519722 | 3519722 | 3538599 | 18878 | Dickeya dadantii 3937 chromosome, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_006905:2630000 | 2630000 | 2654389 | 24390 | Salmonella enterica subsp. enterica serovar Choleraesuis str | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_004741:2593012 | 2593012 | 2615576 | 22565 | Shigella flexneri 2a str. 2457T, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_013282:3216226* | 3216226 | 3243415 | 27190 | Cronobacter turicensis, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_012779:3016327 | 3016327 | 3040890 | 24564 | Edwardsiella ictaluri 93-146, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_010465:1427170 | 1427170 | 1452243 | 25074 | Yersinia pseudotuberculosis YPIII, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |