Pre_GI: BLASTP Hits

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Query: NC_002755:472872:472872 Mycobacterium tuberculosis CDC1551, complete genome

Start: 472872, End: 474197, Length: 1326

Host Lineage: Mycobacterium tuberculosis; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain, also nicknamed "Oshkosh", is a recent clinical isolate from a clothing factory worker from the Kentucky/Tennessee, USA, region. It is highly contagious, infecting approximately 80% of the patient's social contacts. However, this strain has not caused epidemics in man and is sensitive to a wide range of drugs. It is also highly virulent in a mouse lung model, producing several orders of magnitude more bacteria than the H37Rv strain when inoculated. Causative agent of tuberculosis. Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. This bacterium is the causative agent of tuberculosis - a chronic infectious disease with a growing incidence worldwide. It infects 1.7 billion people a year (~33% of the entire world population) and causes over 3 million deaths/year. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. The sluggish growth rate is a result of the tough cell wall that resists the passage of nutrients into the cell and inhibits waste products to be excreted out of the cell. The specialized cell envelope of this organism resembles a modified Gram positive cell wall. It also contains complex fatty acids, such as mycolic acids, that cause the waxy appearance and impermeability of the envelope. These acids are found bound to the cell envelope, but also form cord factors when linked with a carbohydrate component to form a cord-like structure. Primary infection occurs by inhalation of the organism in droplets that are aerosolized by an infected person. The organism initially replicates in cells of the terminal airways, after which it is taken up by, and replicates in, alveolar macrophages. Macrophages distribute the organism to other areas of the lungs and the regional lymph nodes. Once a cell-mediated hypersensitivity immune response develops, replication of the organism decreases and the bacteria become restricted to developing granulomas.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019950:481881:481881481881482522642Mycobacterium canettii CIPT 140060008 complete genome3e-89328
NC_017904:4742775:4781049478104947821731125Mycobacterium sp. MOTT36Y chromosome, complete genome13e12 repeat-containing protein4e-39162
NC_000962:475816:475816475816476184369Mycobacterium tuberculosis H37Rv, complete genomeCONSERVED 13E12 REPEAT FAMILY PROTEIN6e-34145
NC_002945:476835:476835476835477203369Mycobacterium bovis AF2122/97, complete genome13E12 repeat family protein6e-34145
NC_008278:6279553:6294974629497462963831410Frankia alni ACN14a, complete genomehypothetical protein2e-1790.5
NC_018581:3871000:3886547388654738882171671Gordonia sp. KTR9 chromosome, complete genomehypothetical protein2e-1480.5
NC_015673:1038673:1040484104048410418361353Corynebacterium resistens DSM 45100 chromosome, complete genomehypothetical protein4e-1273.2
NC_016789:1805503:1814223181422318153801158Corynebacterium diphtheriae PW8 chromosome, complete genomehypothetical protein9e-1272
NC_016786:1751204:1759925175992517610821158Corynebacterium diphtheriae HC01 chromosome, complete genomehypothetical protein9e-1272
NC_016782:1745374:1759325175932517604821158Corynebacterium diphtheriae 241 chromosome, complete genomehypothetical protein9e-1272
NC_016783:1758319:1767052176705217682091158Corynebacterium diphtheriae INCA 402 chromosome, complete genomehypothetical protein9e-1272
NC_016801:1782401:1791122179112217922791158Corynebacterium diphtheriae C7 (beta) chromosome, complete genomehypothetical protein1e-1171.6
NC_002935:1763886:1774501177450117756581158Corynebacterium diphtheriae NCTC 13129, complete genomehypothetical protein1e-1171.6
NC_016799:1787687:1799220179922018003771158Corynebacterium diphtheriae 31A chromosome, complete genomehypothetical protein1e-1171.6
NC_016802:1709840:1723764172376417249211158Corynebacterium diphtheriae HC02 chromosome, complete genomehypothetical protein1e-1171.6
NC_016790:1702856:1711577171157717127341158Corynebacterium diphtheriae VA01 chromosome, complete genomehypothetical protein3e-1170.1
NC_016788:1730458:1739179173917917403361158Corynebacterium diphtheriae HC04 chromosome, complete genomehypothetical protein3e-1170.1
NC_016787:1726978:1735699173569917368561158Corynebacterium diphtheriae HC03 chromosome, complete genomehypothetical protein9e-1168.6
NC_015683:2249949:2251895225189522530551161Corynebacterium ulcerans BR-AD22 chromosome, complete genomehypothetical protein3e-1067
NC_017317:2149794:2151739215173921528991161Corynebacterium ulcerans 809 chromosome, complete genomehypothetical protein3e-1067
NC_016783:537717:5521965521965533081113Corynebacterium diphtheriae INCA 402 chromosome, complete genomehypothetical protein1e-0965.1
NC_016782:537412:548045548045548599555Corynebacterium diphtheriae 241 chromosome, complete genomehypothetical protein1e-0965.1
NC_016786:533537:548016548016548570555Corynebacterium diphtheriae HC01 chromosome, complete genomehypothetical protein1e-0965.1
NC_016788:527351:5379835379835390951113Corynebacterium diphtheriae HC04 chromosome, complete genomehypothetical protein9e-1065.1
NC_009342:951761:9633799633799644911113Corynebacterium glutamicum R chromosome, complete genomehypothetical protein1e-0861.6
NC_003450:788000:8031288031288042401113Corynebacterium glutamicum ATCC 13032, complete genomehypothetical protein1e-0861.2
NC_012522:5987644:6008147600814760094661320Rhodococcus opacus B4, complete genomehypothetical protein1e-0655.1
NC_017317:134671:1449031449031462281326Corynebacterium ulcerans 809 chromosome, complete genomehypothetical protein5e-0652.8
NC_008278:3169500:317189031718903172174285Frankia alni ACN14a, complete genomehypothetical protein9e-0652