Pre_GI: BLASTP Hits

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Query: NC_002505:860789:870819 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete

Start: 870819, End: 871298, Length: 480

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is an epidemic serogroup of Vibrio cholerae isolated in 1971 in Bangladesh and is distinguished from the classical biotype due to hemolysin production. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012582:882931:892961892961893440480Vibrio cholerae O395 chromosome chromosome I, complete sequenceputative transcriptional regulator2e-79294
NC_012578:818241:828271828271828750480Vibrio cholerae M66-2 chromosome I, complete sequenceputative transcriptional regulator2e-79294
NC_009457:351512:361542361542362021480Vibrio cholerae O395 chromosome 2, complete sequencetranscriptional regulator2e-79294
NC_016944:859492:867838867838868305468Vibrio cholerae IEC224 chromosome I, complete sequencetranscriptional regulator1e-76285
NC_016445:338288:348318348318348785468Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein1e-76285
NC_012668:2744393:279251827925182792985468Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein1e-76285
NC_005139:796546:801777801777802259483Vibrio vulnificus YJ016 chromosome I, complete sequencepredicted transcriptional regulator8e-67252
NC_004459:349500:393267393267393737471Vibrio vulnificus CMCP6 chromosome I, complete sequencePredicted transcriptional regulator2e-66251
NC_009053:1895485:190518919051891905518330Actinobacillus pleuropneumoniae L20, complete genomeputative transcriptional regulator1e-1995.9
NC_004347:3303957:330536033053603305740381Shewanella oneidensis MR-1, complete genometranscriptional regulator, Cro/CI family1e-1375.5
NC_016816:1676460:170624717062471706582336Pantoea ananatis LMG 5342, complete genomeputative transcriptional regulator2e-1374.7
NC_013956:2749685:275249327524932752828336Pantoea ananatis LMG 20103 chromosome, complete genomeYcjC2e-1374.7
NC_014973:243000:249656249656249958303Geobacter sp. M18 chromosome, complete genomehelix-turn-helix domain-containing protein6e-0753.1