Pre_GI: BLASTP Hits

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Query: NC_002505:1892430:1900851 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete

Start: 1900851, End: 1901459, Length: 609

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is an epidemic serogroup of Vibrio cholerae isolated in 1971 in Bangladesh and is distinguished from the classical biotype due to hemolysin production. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016944:1937645:1944318194431819477673450Vibrio cholerae IEC224 chromosome I, complete sequencehypothetical protein1e-116418
NC_016445:1363831:1369410136941013728593450Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein1e-116418
NC_012578:1838470:1845143184514318485923450Vibrio cholerae M66-2 chromosome I, complete sequenceputative helicase1e-116418
NC_012668:1688500:1746049174604917473201272Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein2e-116417
NC_009457:1444449:1451122145112214545623441Vibrio cholerae O395 chromosome 2, complete sequencehypothetical protein4e-113406
NC_012582:1976962:1982541198254119859813441Vibrio cholerae O395 chromosome chromosome I, complete sequenceputative helicase4e-113406
NC_008577:4533574:4549096454909645525423447Shewanella sp. ANA-3 chromosome 1, complete sequenceSNF2-related protein2e-35149
NC_009434:1580205:1588219158821915912573039Pseudomonas stutzeri A1501, complete genomehelicase, putative3e-2098.6
NC_007645:3756654:3767004376700437700153012Hahella chejuensis KCTC 2396, complete genomeSuperfamily II DNA/RNA helicase, SNF2 family3e-1788.2
NC_009656:6224221:6232483623248362355153033Pseudomonas aeruginosa PA7 chromosome, complete genomeSNF2 family DNA/RNA helicase4e-1581.3
NC_015588:939037:9360239360239390403018Isoptericola variabilis 225 chromosome, complete genomeSNF2-related protein3e-0961.6