Pre_GI: BLASTP Hits

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Query: NC_002505:1507860:1528040 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete

Start: 1528040, End: 1528843, Length: 804

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is an epidemic serogroup of Vibrio cholerae isolated in 1971 in Bangladesh and is distinguished from the classical biotype due to hemolysin production. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012668:2115228:211522821152282116031804Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein7e-151533
NC_016445:984856:100503810050381005838801Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeBax protein3e-150530
NC_018678:2382708:238335223833522384143792Alteromonas macleodii str. 'English Channel 673' chromosome,mannosyl-glycoprotein endo-beta-N-acetylglucosamidase5e-51201
NC_009092:2282437:230840123084012309273873Shewanella loihica PV-4, complete genomebax protein, putative1e-50199
NC_017192:159047:175027175027175785759Arcobacter sp. L, complete genomehypothetical protein4e-32138
NC_011653:1671910:168641616864161687192777Thermosipho africanus TCF52B, complete genomeBax protein3e-28125
NC_004337:3590323:371792837179283718752825Shigella flexneri 2a str. 301, complete genomeputative ATP-binding protein2e-25116
NC_015380:303215:3221613221613233991239Candidatus Pelagibacter sp. IMCC9063 chromosome, complete genomebax protein (hydrolyses peptidoglycan)4e-24111
NC_012039:53497:548135481355520708Campylobacter lari RM2100, complete genomemannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain protein2e-22106
NC_003454:370418:381821381821382432612Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeBAX protein5e-0755.1