Pre_GI: BLASTN Hits

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Query: NC_001264:28266 Deinococcus radiodurans R1 chromosome 2, complete sequence

Start: 28266, End: 60405, Length: 32140

Host Lineage: Deinococcus radiodurans; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: This red-pigmented organism's name means "strange berry that withstands radiation", marking the fact that this organism is one of the most radiation-resistant known. It can tolerate radiation levels at 1000 times the levels that would kill a human and it was originally isolated in 1956 from a can of meat that had been irradiated with X-rays. The resistance to radiation may reflect its resistance to dessication, which also causes DNA damage. This organism may be of use in cleaning up toxic metals found at nuclear weapons production sites due to the radiation resistance. This bacterium is also a highly efficient transformer, and can readily take up exogenous DNA from the environment, which may also aid DNA repair. This organism carries multiple copies of many DNA repair genes, suggesting a robust system for dealing with DNA damage. The recombination system may rely on multiple copies of various repeat elements found throughout the genome.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008025:316302*31630236590049599Deinococcus geothermalis DSM 11300, complete genome4e-55224BLASTN svgBLASTP svg
NC_014958:31311913131191315796026770Deinococcus maricopensis DSM 21211 chromosome, complete genome2e-48202BLASTN svgBLASTP svg
NC_012791:82137182137185170230332Variovorax paradoxus S110 chromosome 1, complete genome5e-30141BLASTN svgBLASTP svg
NC_005085:43353334335333437106535733Chromobacterium violaceum ATCC 12472, complete genome2e-29139BLASTN svgBLASTP svg
NC_008340:2614000*2614000263940025401Alkalilimnicola ehrlichei MLHE-1, complete genome8e-29137BLASTN svgBLASTP svg
NC_013446:4723380*4723380475330129922Comamonas testosteroni CNB-2, complete genome1e-24123BLASTN svgBLASTP svg
NC_015410:30034173003417302693723521Pseudomonas mendocina NK-01 chromosome, complete genome5e-24121BLASTN svgBLASTP svg
NC_008702:2039462*2039462206354724086Azoarcus sp. BH72, complete genome5e-24121BLASTN svgBLASTP svg
NC_012560:15645001564500159380029301Azotobacter vinelandii DJ, complete genome3e-22115BLASTN svgBLASTP svg
NC_013446:3147202*3147202318258835387Comamonas testosteroni CNB-2, complete genome3e-22115BLASTN svgBLASTP svg
NC_021150:15642291564229159503430806Azotobacter vinelandii CA6, complete genome3e-22115BLASTN svgBLASTP svg
NC_016002:3704006*3704006373059326588Pseudogulbenkiania sp. NH8B, complete genome1e-21113BLASTN svgBLASTP svg
NC_005125:48050048050051032729828Gloeobacter violaceus PCC 7421, complete genome7e-20107BLASTN svgBLASTP svg
NC_014931:55739425573942559409920158Variovorax paradoxus EPS chromosome, complete genome1e-18103BLASTN svgBLASTP svg
NC_008570:3220539*3220539328055660018Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_007963:31729131729134102923739Chromohalobacter salexigens DSM 3043, complete genome7e-1797.6BLASTN svgBLASTP svg
NC_007677:77116877116883459963432Salinibacter ruber DSM 13855, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_014722:1084616*1084616111430129686Burkholderia rhizoxinica HKI 454, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_007651:16625581662558168442221865Burkholderia thailandensis E264 chromosome I, complete sequence4e-1591.7BLASTN svgBLASTP svg
NC_009720:39681013968101399101722917Xanthobacter autotrophicus Py2, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_010508:93386293386296238928528Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence4e-1591.7BLASTN svgBLASTP svg
NC_015733:1555476*1555476160259947124Pseudomonas putida S16 chromosome, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_011894:34757753475775349467518901Methylobacterium nodulans ORS 2060, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_002947:19886521988652202146032809Pseudomonas putida KT2440, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_014375:1146328*1146328117709930772Brevundimonas subvibrioides ATCC 15264 chromosome, complete genome7e-1487.7BLASTN svgBLASTP svg
NC_010622:25761102576110260423628127Burkholderia phymatum STM815 chromosome 1, complete sequence1e-1283.8BLASTN svgBLASTP svg
NC_015424:16895001689500172544435945Aeromonas veronii B565 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_006350:31951653195165321400518841Burkholderia pseudomallei K96243 chromosome 1, complete sequence4e-1281.8BLASTN svgBLASTP svg
NC_007434:34529853452985347302220038Burkholderia pseudomallei 1710b chromosome I, complete sequence4e-1281.8BLASTN svgBLASTP svg
NC_008785:91441191441194029125881Burkholderia mallei SAVP1 chromosome II, complete sequence4e-1281.8BLASTN svgBLASTP svg
NC_008836:27803392780339280541925081Burkholderia mallei NCTC 10229 chromosome II, complete sequence4e-1281.8BLASTN svgBLASTP svg
NC_009074:30297163029716304855618841Burkholderia pseudomallei 668 chromosome I, complete sequence4e-1281.8BLASTN svgBLASTP svg
NC_009076:30451393045139306397918841Burkholderia pseudomallei 1106a chromosome I, complete sequence4e-1281.8BLASTN svgBLASTP svg
NC_009080:18157681815768183436818601Burkholderia mallei NCTC 10247 chromosome II, complete sequence4e-1281.8BLASTN svgBLASTP svg
NC_009720:1006201*1006201103109924899Xanthobacter autotrophicus Py2, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_010551:84695384695386809921147Burkholderia ambifaria MC40-6 chromosome 1, complete sequence4e-1281.8BLASTN svgBLASTP svg
NC_015161:36668*366686109924432Deinococcus proteolyticus MRP chromosome, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_015733:29635482963548298726023713Pseudomonas putida S16 chromosome, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_010501:15189591518959154333524377Pseudomonas putida W619, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_005773:11353741135374117481539442Pseudomonas syringae pv. phaseolicola 1448A, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_010804:67108167108170545734377Burkholderia multivorans ATCC 17616 chromosome 1, complete6e-1177.8BLASTN svgBLASTP svg
NC_019673:8799533*8799533883442634894Saccharothrix espanaensis DSM 44229 complete genome6e-1177.8BLASTN svgBLASTP svg
NC_019940:33417943341794336057818785Thioflavicoccus mobilis 8321 chromosome, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_003063:30496230496233428329322Agrobacterium tumefaciens str. C58 chromosome linear, complete3e-1075.8BLASTN svgBLASTP svg
NC_014761:2189500*2189500221744427945Oceanithermus profundus DSM 14977 chromosome, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_011992:57100057100058859917600Acidovorax ebreus TPSY, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_009348:14759551475955153571059756Aeromonas salmonicida subsp. salmonicida A449, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_007952:14530001453000147986226863Burkholderia xenovorans LB400 chromosome 2, complete sequence3e-1075.8BLASTN svgBLASTP svg
NC_007760:49111814911181493806026880Anaeromyxobacter dehalogenans 2CP-C, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_003305:17439391743939177259928661Agrobacterium tumefaciens str. C58 chromosome linear, complete3e-1075.8BLASTN svgBLASTP svg
NC_006348:20717492071749209535023602Burkholderia mallei ATCC 23344 chromosome 1, complete sequence1e-0973.8BLASTN svgBLASTP svg
NC_015677:89667389667391821221540Ramlibacter tataouinensis TTB310 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_015856:940625*94062598805147427Collimonas fungivorans Ter331 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_011891:49319614931961494959917639Anaeromyxobacter dehalogenans 2CP-1, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_007086:42934054293405431133917935Xanthomonas campestris pv. campestris str. 8004, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_005070:61744861744864381626369Synechococcus sp. WH 8102, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_003902:71447871447874861534138Xanthomonas campestris pv. campestris str. ATCC 33913, complete4e-0971.9BLASTN svgBLASTP svg
NC_007973:29520042952004297379621793Ralstonia metallidurans CH34 chromosome 1, complete sequence2e-0869.9BLASTN svgBLASTP svg
NC_009648:26997392699739273776838030Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010682:66127266127268656525294Ralstonia pickettii 12J chromosome 1, complete sequence2e-0869.9BLASTN svgBLASTP svg
NC_013522:16833261683326171309929774Thermanaerovibrio acidaminovorans DSM 6589, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_015389:1298689*1298689133142232734Coriobacterium glomerans PW2 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_006513:88112088112091309931980Azoarcus sp. EbN1, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_008781:36889653688965371374824784Polaromonas naphthalenivorans CJ2, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_010125:3467379*3467379349031122933Gluconacetobacter diazotrophicus PAl 5, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_010172:4064087*4064087410309939013Methylobacterium extorquens PA1, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_015161:1556766*1556766159609939334Deinococcus proteolyticus MRP chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_015947:56812456812459380225679Burkholderia sp. JV3 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_008260:10154471015447103954324097Alcanivorax borkumensis SK2, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_001263:72681*726819740324723Deinococcus radiodurans R1 chromosome 1, complete sequence1e-0663.9BLASTN svgBLASTP svg
NC_009138:11389171138917117310234186Herminiimonas arsenicoxydans, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_021064:20852312085231211080625576Propionibacterium avidum 44067, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015711:6522808*6522808656473541928Myxococcus fulvus HW-1 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_015633:41358741358744184328257Vibrio anguillarum 775 chromosome chromosome I, complete sequence4e-0661.9BLASTN svgBLASTP svg
NC_015152:38950038950042209932600Spirochaeta sp. Buddy chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_014541:11659911165991120221836228Ferrimonas balearica DSM 9799 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_012704:57437574378631028874Corynebacterium kroppenstedtii DSM 44385, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_008596:60095116009511605382644316Mycobacterium smegmatis str. MC2 155, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_007759:26389922638992265744218451Syntrophus aciditrophicus SB, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_007347:76745576745579935531901Ralstonia eutropha JMP134 chromosome 1, complete sequence4e-0661.9BLASTN svgBLASTP svg