Pre_GI: BLASTP Hits

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Query: NC_000962:1684005:1687941 Mycobacterium tuberculosis H37Rv, complete genome

Start: 1687941, End: 1689230, Length: 1290

Host Lineage: Mycobacterium tuberculosis; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain has been derived from the original human-lung H37 isolate in 1934, and has been used extensively worldwide in biomedical research. Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. This bacterium is the causative agent of tuberculosis - a chronic infectious disease with a growing incidence worldwide. It infects 1.7 billion people a year (~33% of the entire world population) and causes over 3 million deaths/year. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. The sluggish growth rate is a result of the tough cell wall that resists the passage of nutrients into the cell and inhibits waste products to be excreted out of the cell. The specialized cell envelope of this organism resembles a modified Gram positive cell wall. It also contains complex fatty acids, such as mycolic acids, that cause the waxy appearance and impermeability of the envelope. These acids are found bound to the cell envelope, but also form cord factors when linked with a carbohydrate component to form a cord-like structure. Primary infection occurs by inhalation of the organism in droplets that are aerosolized by an infected person. The organism initially replicates in cells of the terminal airways, after which it is taken up by, and replicates in, alveolar macrophages. Macrophages distribute the organism to other areas of the lungs and the regional lymph nodes. Once a cell-mediated hypersensitivity immune response develops, replication of the organism decreases and the bacteria become restricted to developing granulomas.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016804:1679357:1683293168329316845821290Mycobacterium bovis BCG str. Mexico chromosome, complete genomeputative esterase0860
NC_012943:2707677:2724236272423627255251290Mycobacterium tuberculosis KZN 1435 chromosome, complete genomeesterase lipL0860
NC_008769:1709078:1713014171301417143031290Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomeputative esterase lipL0860
NC_002945:1680751:1684687168468716859761290Mycobacterium bovis AF2122/97, complete genomeesterase LipL0860
NC_012207:1681971:1685907168590716871961290Mycobacterium bovis BCG str. Tokyo 172, complete genomeputative esterase0860
NC_009525:1685522:1689458168945816907471290Mycobacterium tuberculosis H37Ra, complete genomeputative esterase LipL0860
NC_009565:1688642:1692581169258116938671287Mycobacterium tuberculosis F11, complete genomeesterase lipL0858
NC_002755:1684161:1688100168810016893861287Mycobacterium tuberculosis CDC1551, complete genomeesterase0858
NC_016768:2704350:2720909272090927221951287Mycobacterium tuberculosis KZN 4207 chromosome, complete genomeesterase lipL0858
NC_015848:1708176:1712112171211217134011290Mycobacterium canettii CIPT 140010059, complete genomeputative esterase LIPL0858
NC_019950:1689910:1691283169128316925721290Mycobacterium canettii CIPT 140060008 complete genomeEsterase LipL0850
NC_002944:1285436:1288815128881512901011287Mycobacterium avium subsp. paratuberculosis K-10, complete genomeLipL0670
NC_014168:2820315:2838663283866328399131251Segniliparus rotundus DSM 44985 chromosome, complete genomebeta-lactamase8e-96350
NC_013441:27877:5859358593597441152Gordonia bronchialis DSM 43247, complete genomebeta-lactamase9e-43174
NC_018750:3249756:3271989327198932731881200Streptomyces venezuelae ATCC 10712, complete genomeEsterase A9e-40164
NC_013929:5927935:5929399592939959305771179Streptomyces scabiei 87.22 chromosome, complete genomeserine hydrolase1e-35150
NC_018681:3541484:3544501354450135457541254Nocardia brasiliensis ATCC 700358 chromosome, complete genomebeta-lactamase5e-35149
NC_018868:4174794:4176330417633041775201191Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomebeta-lactamase5e-35149
NC_002947:1268089:1291208129120812923531146Pseudomonas putida KT2440, complete genomecarboxylesterase1e-34147
NC_011832:820658:8947328947328959551224Candidatus Methanosphaerula palustris E1-9c, complete genomebeta-lactamase2e-34146
NC_015976:2187377:2209234220923422104451212Sphingobium sp. SYK-6, complete genomeputative hydrolase2e-32140
NC_018681:867230:8987678987679000621296Nocardia brasiliensis ATCC 700358 chromosome, complete genomebeta-lactamase7e-30132
NC_013929:2583849:259361925936192594044426Streptomyces scabiei 87.22 chromosome, complete genomeesterase/lipase6e-1995.9
NC_006361:498305:5124605124605136321173Nocardia farcinica IFM 10152, complete genomeputative esterase3e-1893.2
NC_015976:2187377:2205961220596122071061146Sphingobium sp. SYK-6, complete genomeputative hydrolase1e-1068.2
NC_011761:1904637:1925808192580819270941287Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completebeta-lactamase8e-1065.5
NC_011206:1792621:1811382181138218127401359Acidithiobacillus ferrooxidans ATCC 53993, complete genomebeta-lactamase8e-1065.5
NC_008228:2295841:2305171230517123062801110Pseudoalteromonas atlantica T6c, complete genomebeta-lactamase1e-0861.6
NC_004193:701622:7038557038557053391485Oceanobacillus iheyensis HTE831, complete genomebeta-lactamase2e-0757.4
NC_017271:64293:8081080810822041395Xanthomonas campestris pv. raphani 756C chromosome, completebeta-lactamase5e-0755.8
NC_014931:3642779:3648036364803636497391704Variovorax paradoxus EPS chromosome, complete genomebeta-lactamase1e-0655.1