Pre_GI: BLASTN Hits

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Query: NC_000919:545141 Treponema pallidum subsp. pallidum str. Nichols, complete genome

Start: 545141, End: 574801, Length: 29661

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was originally isolated in 1912 from a neurosyphilitic patient and is virulent. This organism is the causative agent of endemic and venereal syphilis. This sexual transmitted disease was first discovered in Europe at the end of the fifteenth century, however, the causative agent was not identified until 1905. At one time syphilis was the third most commonly reported communicable disease in the USA. Syphilis is characterized by multiple clinical stages and long periods of latent, asymptomatic infection. Although effective therapies have been available since the introduction of penicillin, syphilis remains a global health problem. This organisms is divided into subspecies each of which causes a specific disease. T. pallidum causes the venereal disease syphilis. T. pertenue, T. carateum and T. endemicum cause the skin infections yaws, pinta and bejel, respectively.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010741:54657354657357623329661Treponema pallidum subsp. pallidum SS14, complete genome057540BLASTN svgBLASTP svg
NC_015714:54267954267957234629668Treponema paraluiscuniculi Cuniculi A chromosome, complete genome055760BLASTN svgBLASTP svg
NC_015578:1582827*1582827160713224306Treponema primitia ZAS-2 chromosome, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_011959:972798*97279899909326296Thermomicrobium roseum DSM 5159, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_006085:854500*85450088927234773Propionibacterium acnes KPA171202, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006177:52005552005554053820484Symbiobacterium thermophilum IAM 14863, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004193:25220002522000254434522346Oceanobacillus iheyensis HTE831, complete genome3e-0661.9BLASTN svgBLASTP svg