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Query: NC_000919:12545 Treponema pallidum subsp. pallidum str. Nichols, complete genome

Start: 12545, End: 32928, Length: 20384

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was originally isolated in 1912 from a neurosyphilitic patient and is virulent. This organism is the causative agent of endemic and venereal syphilis. This sexual transmitted disease was first discovered in Europe at the end of the fifteenth century, however, the causative agent was not identified until 1905. At one time syphilis was the third most commonly reported communicable disease in the USA. Syphilis is characterized by multiple clinical stages and long periods of latent, asymptomatic infection. Although effective therapies have been available since the introduction of penicillin, syphilis remains a global health problem. This organisms is divided into subspecies each of which causes a specific disease. T. pallidum causes the venereal disease syphilis. T. pertenue, T. carateum and T. endemicum cause the skin infections yaws, pinta and bejel, respectively.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010741:12542*125423292520384Treponema pallidum subsp. pallidum SS14, complete genome039750BLASTN svgBLASTP svg
NC_015714:1*11836418364Treponema paraluiscuniculi Cuniculi A chromosome, complete genome011120BLASTN svgBLASTP svg
NC_003869:45560*455606745221893Thermoanaerobacter tengcongensis MB4, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_014538:33718*337185528221565Thermoanaerobacter sp. X513 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_014209:81643*8164312009938457Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,7e-1383.8BLASTN svgBLASTP svg
NC_013921:36000*360005820522206Thermoanaerobacter italicus Ab9 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_020134:20500020500022458619587Clostridium stercorarium subsp. stercorarium DSM 8532, complete2e-0971.9BLASTN svgBLASTP svg
NC_011296:102650*10265012914226493Thermodesulfovibrio yellowstonii DSM 11347, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014933:2240000*2240000226386823869Bacteroides helcogenes P 36-108 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015555:49842*498429077940938Thermoanaerobacterium xylanolyticum LX-11 chromosome, complete1e-0869.9BLASTN svgBLASTP svg
NC_019970:35985359857648740503Thermoanaerobacterium thermosaccharolyticum M0795, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003143:16300001630000167609946100Yersinia pestis CO92, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_006155:17560001756000179467638677Yersinia pseudotuberculosis IP 32953, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008149:28023922802392285367651285Yersinia pestis Nepal516, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008150:84472784472789009945373Yersinia pestis Antiqua, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_010634:17555481755548179542439877Yersinia pseudotuberculosis PB1/+, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_019897:3025871*3025871304870622836Thermobacillus composti KWC4 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013730:3208571*3208571324592137351Spirosoma linguale DSM 74, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008536:3988520*3988520401059022071Solibacter usitatus Ellin6076, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_004113:1234048*1234048126028626239Thermosynechococcus elongatus BP-1, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_018643:641360*64136066431322954Alpha proteobacterium HIMB5 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_014363:8228*82283606827841Olsenella uli DSM 7084 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_013209:2032500*2032500205574623247Acetobacter pasteurianus IFO 3283-01, complete genome9e-0660BLASTN svgBLASTP svg