Pre_GI: BLASTP Hits

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Query: NC_017319:192482:211310 Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence

Start: 211310, End: 211573, Length: 264

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004851:191709:2114272114272126231197Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS1294 transposase1e-46184
NC_007608:97092:1146531146531158521200Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS1294 transposase3e-28123
NC_007608:97092:1183971183971196051209Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS1294 transposase3e-28123
NC_009837:92000:934139341394240828Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencetransposase7e-28122
NC_007606:3755155:3755155375515537563631209Shigella dysenteriae Sd197, complete genomeIS1294 ORF2e-27121
NC_010660:175200:2009632009632021471185Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS1294, transposase3e-27120
NC_010660:175200:1954511954511966501200Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS1294, transposase3e-27120
NC_007607:87000:1145111145111158031293Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS1294 transposase2e-27120
NC_007607:87000:1089721089721101801209Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS1294 transposase2e-27120
NC_007941:11319:269612696127227267Escherichia coli UTI89 plasmid pUTI89, complete sequencetransposase5e-27119
NC_004337:1783645:1802878180287818040651188Shigella flexneri 2a str. 301, complete genomeIS91 ORF5e-2096.3
NC_017328:1835108:1855376185537618566081233Shigella flexneri 2002017 chromosome, complete genomeIS91 ORF6e-2096.3
NC_008258:1784637:1802316180231618033891074Shigella flexneri 5 str. 8401, complete genomeIS91 ORF6e-2095.9
NC_013364:1997891:2022346202234620235331188Escherichia coli O111:H- str. 11128, complete genomeputative IS91 transposase4e-1580.1
NC_004741:1823000:1839823183982318410431221Shigella flexneri 2a str. 2457T, complete genomeIS91 orf1e-1478.2
NC_014228:4360676:437865543786554378945291Xenorhabdus nematophila ATCC 19061, complete genomePutative transposase2e-0754.7