Pre_GI: BLASTP Hits

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Query: NC_013716:3109700:3148268 Citrobacter rodentium ICC168, complete genome

Start: 3148268, End: 3148489, Length: 222

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:4470932:447788244778824478103222Escherichia coli O55:H7 str. CB9615 chromosome, complete genometype III secretion apparatus needle protein1e-22105
NC_002655:4653160:465935546593554659576222Escherichia coli O157:H7 EDL933, complete genomeescF1e-22105
NC_002695:4584177:459037245903724590593222Escherichia coli O157:H7 str. Sakai, complete genomeEscF1e-22105
AP010958:3669500:368025536802553680476222Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS structure protein EscF1e-22105
NC_011353:4688000:469347646934764693697222Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype III secretion apparatus needle protein1e-22105
NC_011601:4096427:410426041042604104481222Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS structure protein EscF1e-22105
NC_013008:4643825:464951746495174649738222Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeLEE-encoded type III secretion system component1e-22105
NC_013353:3669500:368025536802553680476222Escherichia coli O103:H2 str. 12009, complete genomeT3SS structure protein EscF1e-22105
NC_013361:5319497:536332453633245363545222Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS structure protein EscF1e-22105
NC_013364:3701895:372187937218793722100222Escherichia coli O111:H- str. 11128, complete genomeT3SS structure protein EscF1e-22105
NC_014012:2565329:257368425736842573899216Shewanella violacea DSS12, complete genometype III secretion system apparatus protein, putative3e-0753.9
NC_010067:1507823:152704315270431527258216Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-0651.6