Pre_GI: BLASTP Hits

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Query: NC_011080:610428:626217 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 626217, End: 626453, Length: 237

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:604789:621295621295621531237Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein2e-28124
NC_006905:651732:671962671962672198237Salmonella enterica subsp. enterica serovar Choleraesuis strputative periplasmic protein2e-28124
NC_011205:645591:666804666804667040237Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-28124
NC_011274:603901:619640619640619876237Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein2e-28124
NC_011294:585500:601268601268601504237Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-28124
NC_012125:600586:620790620790621026237Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-28124
NC_016831:2402893:240289324028932403129237Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-28124
NC_003198:598000:613438613438613674237Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical secreted protein2e-28124
NC_004631:2366335:236742723674272367663237Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical secreted protein2e-28124
NC_010102:2495441:249601424960142496250237Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-28124
NC_011083:654479:670240670240670476237Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein2e-28124
NC_016863:606742:622503622503622739237Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein2e-28124
NC_016860:644095:659857659857660093237Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-28124
NC_016857:604792:621298621298621534237Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Hypothetical secreted protein2e-28124
NC_016856:606742:622504622504622740237Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein2e-28124
NC_016832:2363136:236422823642282364464237Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-28124
NC_016810:604813:621298621298621534237Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-28124
NC_003197:606048:621810621810622046237Salmonella typhimurium LT2, complete genomeputative periplasmic protein2e-28124
NC_011149:588895:604683604683604919237Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein3e-28123
NC_011094:688626:704759704759704995237Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein4e-28123
NC_011147:2247460:224803322480332248269237Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-27122
NC_006511:2251022:225284922528492253085237Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical secreted protein1e-27122
NC_015761:520858:536420536420536656237Salmonella bongori NCTC 12419, complete genomehypothetical protein3e-26116
NC_012947:3487392:349418934941893494425237Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-1271.2
NC_011415:351810:352412352412352663252Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-1271.2
NC_013941:378555:399568399568399819252Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-1270.9
NC_007946:289425:338297338297338548252Escherichia coli UTI89, complete genomehypothetical protein YkgI precursor5e-1269.7
NC_004431:364000:402825402825403076252Escherichia coli CFT073, complete genomeHypothetical protein ykgI precursor5e-1269.7
NC_008253:334467:394992394992395228237Escherichia coli 536, complete genomehypothetical secreted protein5e-1269.7
NC_011742:291237:327662327662327898237Escherichia coli S88 chromosome, complete genomehypothetical protein5e-1269.7
NC_011745:333061:354696354696354932237Escherichia coli ED1a chromosome, complete genomehypothetical protein5e-1269.7
NC_010473:279948:293105293105293341237Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein6e-1269.3
NC_000913:303719:317555317555317791237Escherichia coli K12, complete genomehypothetical protein6e-1269.3
AC_000091:303719:317555317555317791237Escherichia coli W3110 DNA, complete genomehypothetical protein6e-1269.3