Pre_GI: BLASTP Hits

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Query: NC_010322:3084834:3092337 Pseudomonas putida GB-1 chromosome, complete genome

Start: 3092337, End: 3093557, Length: 1221

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:2641715:2648352264835226494911140Pseudomonas syringae pv. phaseolicola 1448A, complete genomeRhs family protein1e-50200
NC_005773:3253575:3264780326478032660121233Pseudomonas syringae pv. phaseolicola 1448A, complete genomeRhs family protein3e-48192
NC_003295:3688000:3698062369806236992221161Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSMEMBRANE PROTEIN8e-29128
NC_014311:1:2607126071272731203Ralstonia solanacearum PSI07 chromosome, complete genomehypothetical protein3e-28126
NC_014307:1:2937629376305271152Ralstonia solanacearum CFBP2957 chromosome, complete genomemembrane protein3e-27123
NC_013956:3273340:3277830327783032789931164Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein1e-26120
NC_016514:2713834:2760100276010027614401341Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein5e-23109
NC_007511:719493:7243637243637287034341Burkholderia sp. 383 chromosome 2, complete sequenceRhs family protein7e-23108
NC_009832:3313058:3321185332118533225191335Serratia proteamaculans 568, complete genomePAAR repeat-containing protein9e-23108
NC_010694:962383:9681079681079724144308Erwinia tasmaniensis, complete genomeRhs family protein3e-22106
NC_012214:1267589:1272737127273712770234287Erwinia pyrifoliae Ep1/96, complete genomeRhs family protein3e-21103
NC_013961:2861949:2867965286796528722124248Erwinia amylovora, complete genomeProtein rhsC precursor3e-21103
NC_013961:2579000:2604838260483826091184281Erwinia amylovora, complete genomeProtein rhsB precursor3e-21103
NC_013971:2617000:2642366264236626466464281Erwinia amylovora ATCC 49946 chromosome, complete genomeRhs family protein3e-21103
NC_014228:3442159:3447150344715034515804431Xenorhabdus nematophila ATCC 19061, complete genomeputative Rhs family protein2e-21103
NC_012962:3463644:3484950348495034892214272Photorhabdus asymbiotica, complete genomeputative membrane-bound sugar-binding protein9e-21101
NC_017046:329847:3325253325253338201296Salmonella enterica subsp. enterica serovar Typhimurium str. 798Rhs-family protein (SPI-6 associated)1e-20101
NC_012962:1068102:1105653110565311100084356Photorhabdus asymbiotica, complete genomehypothetical protein2e-20100
NC_016810:329849:3325213325213361233603Salmonella enterica subsp. enterica serovar Typhimurium strRhs family protein2e-20100
NC_016857:329849:3325213325213361233603Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Rhs1 protein2e-20100
NC_011080:333121:3357993357993398784080Salmonella enterica subsp. enterica serovar Newport str. SL254,Rhs-family protein2e-20100
NC_003197:332086:3325513325513366454095Salmonella typhimurium LT2, complete genomeputative RHS-like protein1e-20100
NC_016856:332771:3332363332363373304095Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative RHS-like protein1e-20100
NC_016860:332087:3325523325523366464095Salmonella enterica subsp. enterica serovar Typhimurium strputative RHS-like protein1e-20100
NC_016863:332060:3325253325253366194095Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative RHS-like protein1e-20100
NC_011205:329155:3318333318333355193687Salmonella enterica subsp. enterica serovar Dublin str. CT_020218531e-20100
NC_011094:334267:3347323347323384183687Salmonella enterica subsp. enterica serovar Schwarzengrund str1e-20100
NC_003198:331314:3313143313143353784065Salmonella enterica subsp. enterica serovar Typhi str. CT18,Rhs-family protein6e-2099
NC_013956:1207500:1225161122516112293544194Pantoea ananatis LMG 20103 chromosome, complete genomeRhsD1e-1997.8
NC_016816:3373950:3373950337395033781104161Pantoea ananatis LMG 5342, complete genomeRhs family protein2e-1997.4
NC_005126:349658:3726773726773771044428Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-1894.4
NC_010501:2796000:2801626280162628058614236Pseudomonas putida W619, complete genomeYD repeat protein3e-1893.2
NC_014121:3188928:3200343320034332045994257Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeRhs family protein1e-1791.3
NC_004547:3207776:3207776320777632120354260Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative RHS protein2e-1790.1
NC_015733:1793399:1798586179858618006222037Pseudomonas putida S16 chromosome, complete genome5e-1789.4
NC_017986:5605197:5606290560629056104924203Pseudomonas putida ND6 chromosome, complete genomeYD repeat-containing protein2e-1687.4
NC_011002:703194:7243577243577286044248Burkholderia cenocepacia J2315 chromosome 3, complete sequenceRHS-family protein2e-1687
NC_002947:3492379:3511330351133035154874158Pseudomonas putida KT2440, complete genomerhs-related protein3e-1686.7
NC_013421:385930:3859303859303900694140Pectobacterium wasabiae WPP163, complete genomeYD repeat protein5e-1685.9
NC_013592:1668092:1668092166809216723724281Dickeya dadantii Ech586, complete genomeYD repeat protein9e-1685.1
NC_015138:2110149:2113250211325021180044755Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeRHS repeat-associated core domain-containing protein1e-1584.7
NC_014500:894136:9073929073929116964305Dickeya dadantii 3937 chromosome, complete genomeRhs-family protein2e-1584
NC_007005:5882205:5911246591124659154754230Pseudomonas syringae pv. syringae B728a, complete genomeYD repeat2e-1584
NC_014500:3097362:3131418313141831357284311Dickeya dadantii 3937 chromosome, complete genomeRhs-family protein2e-1584
NC_013421:1744928:1744928174492817492714344Pectobacterium wasabiae WPP163, complete genomeYD repeat protein2e-1583.6
NC_012912:483390:4833904833904878174428Dickeya zeae Ech1591, complete genomeYD repeat protein6e-1582.4
NC_012912:1701231:1720854172085417252274374Dickeya zeae Ech1591, complete genomeYD repeat protein7e-1582
NC_005773:5734733:5751579575157957557844206Pseudomonas syringae pv. phaseolicola 1448A, complete genomeRHS family protein9e-1581.6
NC_010501:4311873:4315143431514343193034161Pseudomonas putida W619, complete genomeYD repeat protein2e-1480.9
NC_002947:4604582:4613627461362746182194593Pseudomonas putida KT2440, complete genomeRHS family protein, putative4e-1273.2
NC_013892:274297:2941602941602987374578Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein8e-1272
NC_012962:3463644:3494572349457234984113840Photorhabdus asymbiotica, complete genomehypothetical protein3e-1170.1
NC_008543:2035292:2041830204183020463144485Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceYD repeat protein3e-1170.1
NC_008061:428501:4333524333524378364485Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencePAAR3e-1170.1
NC_010552:2089140:2097457209745721019444488Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceYD repeat protein3e-1169.7
NC_010515:2358134:2362974236297423674374464Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceYD repeat protein3e-1169.7
NC_006155:4302826:4307136430713643114044269Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein7e-1168.9
NC_003143:4006884:4020241402024140231052865Yersinia pestis CO92, complete genomehypothetical protein7e-1168.9
NC_008149:4053363:4067021406702140698852865Yersinia pestis Nepal516, complete genomehypothetical protein7e-1168.9
NC_009381:222735:2360712360712389352865Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein7e-1168.9
NC_014029:3958811:3972168397216839750322865Yersinia pestis Z176003 chromosome, complete genomehypothetical protein7e-1168.9
NC_017154:3898925:3912282391228239151462865Yersinia pestis D106004 chromosome, complete genomehypothetical protein7e-1168.9
NC_017160:4073611:4087269408726940901332865Yersinia pestis D182038 chromosome, complete genomehypothetical protein7e-1168.9
NC_017168:1631052:1644409164440916472732865Yersinia pestis A1122 chromosome, complete genomehypothetical protein7e-1168.9
NC_010465:429095:4422674422674464394173Yersinia pseudotuberculosis YPIII, complete genomeYD repeat protein6e-1168.9
NC_009708:372422:3856273856273898354209Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeRHS/YD repeat-containing protein6e-1168.9
NC_008752:3684739:3695033369503336997844752Acidovorax avenae subsp. citrulli AAC00-1, complete genomeYD repeat protein9e-1168.6
NC_009708:372422:3913353913353955914257Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeRHS/YD repeat-containing protein7e-1168.6
NC_005810:4469156:4483007448300744858982892Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein7e-1168.6
NC_004088:266543:2802002802002830912892Yersinia pestis KIM, complete genomeRhs-like protein7e-1168.6
NC_011001:2517159:2525066252506625296134548Burkholderia cenocepacia J2315 chromosome 2, complete sequenceRHS-family protein1e-1068.2
NC_005810:4469156:4472528447252844770694542Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein3e-1067
NC_016816:1852659:1864699186469918691534455Pantoea ananatis LMG 5342, complete genomeRHS Repeat family protein5e-1065.9
NC_013956:2592378:2604874260487426089774104Pantoea ananatis LMG 20103 chromosome, complete genomeRhsD5e-1065.9
NC_014310:1413210:1430985143098514356014617Ralstonia solanacearum PSI07 megaplasmid, complete sequencerhs-related transmembrane protein5e-1065.9
NC_014228:3353896:3358694335869433619093216Xenorhabdus nematophila ATCC 19061, complete genome5e-1065.9
NC_020209:4643901:4643901464390146482714371Pseudomonas poae RE*1-1-14, complete genomehypothetical protein1e-0965.1
NC_005139:2731623:2741159274115927441583000Vibrio vulnificus YJ016 chromosome I, complete sequencehypothetical protein1e-0964.3
NC_003296:1419992:1432475143247514370284554Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE RHS-RELATED TRANSMEMBRANE PROTEIN2e-0964.3
NC_015379:6714545:6714545671454567189844440Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein2e-0963.9
NC_014965:670115:6764996764996800413543Vibrio vulnificus MO6-24/O chromosome I, complete sequencemembrane protein2e-0963.9
NC_004459:1679335:1685633168563316891903558Vibrio vulnificus CMCP6 chromosome I, complete sequenceSuperfamily II DNA helicase2e-0963.9
NC_008149:4053363:4056539405653940610774539Yersinia pestis Nepal516, complete genomemembrane protein3e-0963.5
NC_017160:4073611:4076787407678740813254539Yersinia pestis D182038 chromosome, complete genomehypothetical protein3e-0963.5
NC_010634:4234932:4237947423794742425094563Yersinia pseudotuberculosis PB1/+, complete genomeYD repeat-containing protein3e-0963.5
NC_004088:266543:2697192697192742634545Yersinia pestis KIM, complete genomeRhs-like core protein2e-0963.5
NC_015379:6714545:6719349671934967237674419Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein8e-0962
NC_016514:2713834:2748218274821827526064389Enterobacter cloacae EcWSU1 chromosome, complete genomeRhsB9e-0961.6
NC_014121:1589389:1591543159154315959314389Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-0861.6
NC_013282:1256769:128772312877231287983261Cronobacter turicensis, complete genomehypothetical protein1e-0861.2
NC_020209:4643901:4648647464864746530204374Pseudomonas poae RE*1-1-14, complete genomehypothetical protein1e-0861.2
NC_017068:1732857:173682017368201737170351Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein5e-0859.3
NC_004547:3817656:3837677383767738390501374Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative phospholipase7e-0858.9
NC_004547:1873390:1918143191814319198851743Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein2e-0653.9
NC_012912:2901021:292103129210312921555525Dickeya zeae Ech1591, complete genomePAAR repeat-containing protein5e-0652.8
NC_010981:1371265:137711013771101377364255Wolbachia pipientis, complete genomePutative phage related protein6e-0652.4