Pre_GI: BLASTP Hits

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Query: NC_008262:381323:381323 Clostridium perfringens SM101, complete genome

Start: 381323, End: 382297, Length: 975

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009633:1058000:1079458107945810809331476Alkaliphilus metalliredigens QYMF chromosome, complete genomesecretion protein HlyD family protein3e-24112
NC_016627:3972751:3984018398401839855531536Clostridium clariflavum DSM 19732 chromosome, complete genomehypothetical protein6e-21101
NC_014393:187454:2229602229602244201461Clostridium cellulovorans 743B chromosome, complete genomesecretion protein HlyD family protein8e-1478.2
NC_008600:4898000:4898032489803248990901059Bacillus thuringiensis str. Al Hakam, complete genomepossible periplasmic component of efflux system3e-1273.2
NC_014721:314990:3281493281493295491401Caldicellulosiruptor kristjanssonii 177R1B chromosome, completesecretion protein hlyd family protein8e-1271.6
NC_015949:2156843:2165990216599021673901401Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomesecretion protein HlyD family protein1e-1170.5
NC_014392:355443:3763193763193777131395Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomesecretion protein HlyD family protein4e-1065.9
NC_013960:841181:8491528491528505281377Nitrosococcus halophilus Nc4 chromosome, complete genomesecretion protein HlyD family protein9e-1064.7
NC_009437:166179:168380168380168763384Caldicellulosiruptor saccharolyticus DSM 8903, complete genome7e-0961.6
NC_015856:2146713:2170136217013621715151380Collimonas fungivorans Ter331 chromosome, complete genometype I secretion membrane fusion protein, HlyD9e-0857.8
NC_015732:2449900:2457876245787624590271152Spirochaeta caldaria DSM 7334 chromosome, complete genomesecretion protein HlyD family protein1e-0653.9
NC_008319:1081614:1096473109647310980081536Synechococcus sp. CC9311, complete genomeHlyD family secretion protein domain protein2e-0653.9
NC_012779:2064582:2078636207863620799731338Edwardsiella ictaluri 93-146, complete genometype I secretion membrane fusion protein, HlyD family2e-0653.1
NC_015565:431273:4348684348684359981131Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeRND family efflux transporter MFP subunit3e-0653.1