Pre_GI: BLASTP Hits

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Query: NC_008262:2025699:2033923 Clostridium perfringens SM101, complete genome

Start: 2033923, End: 2034669, Length: 747

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015519:801929:8143308143308198075478Tepidanaerobacter sp. Re1 chromosome, complete genomebeta-galactosidase5e-1891.3
NC_016771:2933886:2936050293605029396313582Bacillus cereus NC7401, complete genomehypothetical protein3e-1582
NC_011658:2978000:2980173298017329837543582Bacillus cereus AH187 chromosome, complete genomealpha-fucosidase3e-1582
NC_014638:1509637:1528580152858015324943915Bifidobacterium bifidum PRL2010 chromosome, complete genomeglycosyl hydrolase family protein1e-1170.1
NC_003366:2143173:2145801214580121502404440Clostridium perfringens str. 13, complete genomehypothetical protein1e-1170.1
NC_017186:3947874:3953896395389639558511956Amycolatopsis mediterranei S699 chromosome, complete genomealpha-galactosidase4e-0961.6
NC_014318:3947845:3953867395386739558221956Amycolatopsis mediterranei U32 chromosome, complete genomealpha-galactosidase4e-0961.6
NC_013730:3208571:3242301324230132459213621Spirosoma linguale DSM 74, complete genomeGlycosyl hydrolase family 98 putative carbohydrate binding module2e-0859.7
NC_013093:1157476:1157476115747611595572082Actinosynnema mirum DSM 43827, complete genomeAlpha-galactosidase3e-0755.8