Pre_GI: BLASTP Hits

Some Help

Query: NC_008261:2920999:2937128 Clostridium perfringens ATCC 13124, complete genome

Start: 2937128, End: 2938297, Length: 1170

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013791:2273389:2274971227497122761371167Bacillus pseudofirmus OF4 chromosome, complete genomeisoaspartyl dipeptidase1e-106386
NC_002570:1220180:1224997122499712261721176Bacillus halodurans C-125, complete genomeisoaspartyl dipeptidase3e-101369
NC_009718:1411793:1415328141532814165361209Fervidobacterium nodosum Rt17-B1, complete genomeisoaspartyl dipeptidase8e-95347
NC_014541:2510819:2515154251515425163231170Ferrimonas balearica DSM 9799 chromosome, complete genomeisoaspartyl dipeptidase3e-87322
NC_009654:4624459:4627825462782546290061182Marinomonas sp. MWYL1, complete genomeisoaspartyl dipeptidase3e-78292
NC_015559:3511231:3511231351123135124121182Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeisoaspartyl dipeptidase3e-77289
NC_008253:4817864:4861588486158848627601173Escherichia coli 536, complete genomeIsoaspartyl dipeptidase3e-75282
NC_010498:4967724:4983394498339449845661173Escherichia coli SMS-3-5, complete genomebeta-aspartyl peptidase1e-74280
NC_015761:4355335:4379349437934943805211173Salmonella bongori NCTC 12419, complete genomeisoaspartyl dipeptidase2e-74279
NC_014618:4657719:4683548468354846847201173Enterobacter cloacae SCF1 chromosome, complete genomeisoaspartyl dipeptidase8e-74277
NC_012779:1449500:1451208145120814523561149Edwardsiella ictaluri 93-146, complete genomebeta-aspartyl peptidase, putative1e-69263
NC_009802:1525144:1561901156190115630401140Campylobacter concisus 13826, complete genomebeta-aspartyl peptidase2e-69263