Pre_GI: BLASTP Hits

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Query: NC_008228:816000:824348 Pseudoalteromonas atlantica T6c, complete genome

Start: 824348, End: 825466, Length: 1119

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016641:5808113:5814534581453458156611128Paenibacillus terrae HPL-003 chromosome, complete genomeDNA-cytosine methyltransferase1e-111403
NC_011741:4570498:4577258457725845783971140Escherichia coli IAI1 chromosome, complete genomeputative modification methylase NmeDIP3e-111402
CU928160:4570498:4577258457725845783971140Escherichia coli IAI1 chromosome, complete genomeputative modification methylase NmeDIP3e-111402
NC_012968:507988:5139425139425151051164Methylotenera mobilis JLW8, complete genomeDNA-cytosine methyltransferase3e-106385
NC_002506:207097:2145742145742157251152Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completesite-specific DNA-methyltransferase, putative1e-105383
NC_009456:998935:1010369101036910115201152Vibrio cholerae O395 chromosome 1, complete sequenceputative site-specific DNA-methyltransferase1e-105383
NC_012580:207025:2145022145022156531152Vibrio cholerae M66-2 chromosome II, complete sequencesite-specific DNA-methyltransferase1e-105383
NC_012583:242760:2494492494492506001152Vibrio cholerae O395 chromosome chromosome II, complete sequenceputative site-specific DNA-methyltransferase1e-105383
NC_016446:979884:9873499873499885001152Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completeDNA (cytosine-5-)-methyltransferase1e-105383
NC_016945:207089:2145542145542157051152Vibrio cholerae IEC224 chromosome II, complete sequenceDNA (cytosine-5-)-methyltransferase1e-105383
NC_008536:2079052:2101203210120321024741272Solibacter usitatus Ellin6076, complete genomeDNA-cytosine methyltransferase7e-103374
NC_012997:4545875:4575465457546545766071143Teredinibacter turnerae T7901, complete genomeDNA-methyltransferase1e-95350
NC_012667:46432:578665786658837972Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein2e-93343
NC_008536:2079052:2120696212069621219551260Solibacter usitatus Ellin6076, complete genomeDNA-cytosine methyltransferase1e-59230
NC_003295:3688000:3709048370904837101421095Ralstonia solanacearum GMI1000, complete genomePROBABLE DNA MODIFICATION CYTOSINE-SPECIFIC METHYLTRANSFERASE PROTEIN7e-21101
NC_002947:4484824:4500014450001445010601047Pseudomonas putida KT2440, complete genomeDNA-cytosine methyltransferase5e-2099
NC_011916:1180973:1190105119010511911121008Caulobacter crescentus NA1000 chromosome, complete genomeDNA-cytosine methyltransferase7e-1892
NC_002696:1154996:1164128116412811651351008Caulobacter crescentus CB15, complete genomeC-5 cytosine-specific DNA methylase7e-1892
NC_014555:47372:473724737248217846Helicobacter pylori PeCan4 chromosome, complete genomecytosine specific DNA methyltransferase4e-1685.9
NC_009455:53000:8360283602846091008Dehalococcoides sp. BAV1 chromosome, complete genomeDNA-cytosine methyltransferase8e-1685.1
NC_009802:352641:3595633595633607291167Campylobacter concisus 13826, complete genomemodification methylase HaeIII (Cytosine-specificmethyltransferase HaeIII; M.HaeIII)3e-1480.1
NC_014033:1088500:109947310994731100465993Prevotella ruminicola 23 chromosome, complete genomeprophage PRU01 DNA methylase, C-5 cytosine-specific family3e-1479.7
NC_014828:1335154:1363419136341913647351317Ethanoligenens harbinense YUAN-3 chromosome, complete genomeDNA-cytosine methyltransferase3e-1479.7
NC_009715:1829978:1859706185970618607641059Campylobacter curvus 525.92 chromosome, complete genomecytosine-specific methyltransferase NlaX2e-1377.4
NC_009663:2531876:2534545253454525356331089Sulfurovum sp. NBC37-1, complete genomecytosine-specific methyltransferase2e-1377.4
NC_013061:1052957:1083384108338410848081425Pedobacter heparinus DSM 2366, complete genomeDNA-cytosine methyltransferase6e-1375.5
NC_013161:1023716:1044410104441010456661257Cyanothece sp. PCC 8802, complete genomeDNA-cytosine methyltransferase3e-1273.2
NC_011726:1023690:1044384104438410456401257Cyanothece sp. PCC 8801, complete genomeDNA-cytosine methyltransferase3e-1273.2
NC_016043:1603499:1607109160710916081251017Taylorella asinigenitalis MCE3 chromosome, complete genomeDNA-cytosine methyltransferase4e-1272.8
NC_014638:1139824:114938911493891150369981Bifidobacterium bifidum PRL2010 chromosome, complete genomecytosine methyl transferase Dcm4e-1272.8
NC_003901:357394:3728343728343741051272Methanosarcina mazei Go1, complete genomeDNA-cytosine methyltransferase4e-1272.4
NC_009464:650997:6667426667426680011260Uncultured methanogenic archaeon RC-I, complete genomeC-5 cytosine-specific DNA methyltransferase6e-1272.4
NC_010371:57683:576835768358675993Finegoldia magna ATCC 29328 plasmid pFMC, complete sequencecytosine-specific methyltransferase6e-1272
NC_016510:1749967:1769061176906117700921032Flavobacterium columnare ATCC 49512 chromosome, complete genomeDNA-cytosine methyltransferase1e-1171.2
NC_012778:1819559:1853605185360518550381434Eubacterium eligens ATCC 27750, complete genomeDNA (cytosine-5-)-methyltransferase3e-1170.1
NC_009802:352641:3607393607393622081470Campylobacter concisus 13826, complete genomeputative two-component sensor3e-1170.1
NC_014924:1762995:1772973177297317743041332Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeDNA-cytosine methyltransferase3e-1169.7
NC_010322:583842:6009436009436020761134Pseudomonas putida GB-1 chromosome, complete genomeDNA-cytosine methyltransferase6e-1168.9
NC_009439:4404942:4416852441685244179491098Pseudomonas mendocina ymp, complete genomeDNA-cytosine methyltransferase8e-1168.6
NC_014935:1165276:1189649118964911908331185Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeDNA-cytosine methyltransferase9e-1168.2
NC_017188:1172181:1293246129324612947571512Bacillus amyloliquefaciens TA208 chromosome, complete genomeSP-beta prophage DNA (cytosine-5-)-methyltransferase1e-1067.4
NC_017191:1173989:1294823129482312963341512Bacillus amyloliquefaciens XH7 chromosome, complete genome5C-DNA methyltransferase1e-1067.4
NC_017190:2130651:2163862216386221653731512Bacillus amyloliquefaciens LL3 chromosome, complete genomeModification methylase Rho11sI1e-1067.4
NC_013172:2877722:2897180289718028984751296Brachybacterium faecium DSM 4810, complete genomeDNA-methyltransferase Dcm3e-1066.6
NC_015147:9761:97619761109301170Arthrobacter phenanthrenivorans Sphe3 plasmid pASPHE302, completeDNA-methyltransferase Dcm4e-1066.2
NC_014924:2399524:2408981240898124102581278Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeDNA-cytosine methyltransferase4e-1066.2
NC_007577:353755:3584683584683605282061Prochlorococcus marinus str. MIT 9312, complete genomeDNA-cytosine methyltransferase4e-1065.9
NC_003911:1078949:1096391109639110975121122Silicibacter pomeroyi DSS-3, complete genomeDNA methylase, C-5 cytosine-specific family5e-1065.5
NC_013132:782846:7838817838817850531173Chitinophaga pinensis DSM 2588, complete genomeDNA-cytosine methyltransferase8e-1065.1
NC_015846:24771:3549435494365701077Capnocytophaga canimorsus Cc5 chromosome, complete genomeMHphi(C)1e-0964.7
NC_008816:369074:3737513737513758472097Prochlorococcus marinus str. AS9601, complete genomeDNA-cytosine methyltransferase1e-0964.3
NC_008253:3941938:395092439509243951841918Escherichia coli 536, complete genomeputative type II 5-cytosoine methyltransferase3e-0963.5
NC_004663:6223442:6237974623797462391821209Bacteroides thetaiotaomicron VPI-5482, complete genomeputative cytosine-specific methyltransferase3e-0963.5
NC_011894:5056901:5064776506477650658611086Methylobacterium nodulans ORS 2060, complete genomeDNA-cytosine methyltransferase3e-0963.5
NC_015674:66000:722917229173289999Helicobacter bizzozeronii CIII-1, complete genomeDNA-cytosine methyltransferase2e-0963.5
NC_014752:1530000:1543236154323615443541119Neisseria lactamica ST-640, complete genomemodification methylase3e-0963.2
NC_015259:2757081:2777600277760027790421443Polymorphum gilvum SL003B-26A1 chromosome, complete genomeModification methylase DdeI3e-0963.2
NC_014560:171931:1815611815611828051245Helicobacter pylori SJM180 chromosome, complete genomeDNA-cytosine methyltransferase6e-0962.4
NC_006958:1872849:1879784187978418808751092Corynebacterium glutamicum ATCC 13032, complete genomeMODIFICATION METHYLASE6e-0962.4
NC_003450:1871377:1878333187833318794031071Corynebacterium glutamicum ATCC 13032, complete genomesite-specific DNA methylase or5e-0962.4
NC_011883:303980:314426314426315358933Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,DNA-cytosine methyltransferase5e-0962.4
NC_003047:3419212:3427974342797434292961323Sinorhizobium meliloti 1021, complete genomePUTATIVE CYTOSINE-SPECIFIC METHYLTRANSFERASE PROTEIN6e-0962
NC_017516:1439775:1453923145392314551431221Neisseria meningitidis H44/76 chromosome, complete genomeDNA-cytosine methyltransferase8e-0962
NC_017514:1396000:1408070140807014093051236Neisseria meningitidis M01-240149 chromosome, complete genomeDNA-cytosine methyltransferase1e-0861.6
NC_010120:788000:7940657940657953001236Neisseria meningitidis 053442, complete genomeDNA (cytosine-5-)-methyltransferase8e-0961.6
NC_017512:760000:7656017656017668361236Neisseria meningitidis WUE 2594, complete genomeputative type II restriction-modification system enzyme Mod8e-0961.6
NC_017517:867595:8744168744168756511236Neisseria meningitidis M01-240355 chromosome, complete genomeDNA-cytosine methyltransferase8e-0961.6
NC_003112:844000:8488928488928501271236Neisseria meningitidis MC58, complete genomeC-5 cytosine-specific DNA methylase8e-0961.6
NC_017505:841496:8484648484648496991236Neisseria meningitidis alpha710 chromosome, complete genomeC-5 cytosine-specific DNA methylase8e-0961.6
NC_017515:1429317:1442951144295114441861236Neisseria meningitidis M04-240196 chromosome, complete genomeDNA-cytosine methyltransferase8e-0961.6
NC_003116:988000:9947869947869960211236Neisseria meningitidis Z2491, complete genomemodification methylase8e-0961.6
NC_014033:772754:7823677823677837131347Prevotella ruminicola 23 chromosome, complete genomeC-5 cytosine-specific family DNA methylase1e-0861.2
NC_019792:153661:1747091747091759201212Natronobacterium gregoryi SP2 chromosome, complete genomeDNA-methyltransferase Dcm1e-0861.2
NC_015510:3273308:3288809328880932900711263Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeDNA-cytosine methyltransferase1e-0860.8
NC_014976:627935:6771376771376782791143Bacillus subtilis BSn5 chromosome, complete genomecytosine-specific methyltransferase2e-0860.8
NC_016010:637535:646839646839647609771Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeSite-specific DNA methylase2e-0860.5
NC_010694:1052722:1077062107706210782491188Erwinia tasmaniensis, complete genomeC-5 cytosine-specific DNA methylase family protein2e-0860.5
NC_010572:3925803:3937738393773839388291092Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative SacI methylase3e-0860.1
NC_010338:650054:6602006602006615221323Caulobacter sp. K31, complete genomeDNA-cytosine methyltransferase3e-0860.1
NC_010338:426388:4333984333984347201323Caulobacter sp. K31, complete genomeDNA-cytosine methyltransferase3e-0860.1
NC_011883:303980:315355315355316281927Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,DNA-cytosine methyltransferase3e-0859.7
NC_009674:840000:8607208607208618351116Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeDNA-cytosine methyltransferase4e-0859.3
NC_016510:1749967:1749967174996717511841218Flavobacterium columnare ATCC 49512 chromosome, complete genomecytosine-specific methyltransferase6e-0858.9
NC_009840:396319:4000224000224021182097Prochlorococcus marinus str. MIT 9215, complete genomeSite-specific DNA methylase7e-0858.5
NC_008817:387408:3937773937773958462070Prochlorococcus marinus str. MIT 9515, complete genomeDNA-cytosine methyltransferase1e-0758.2
NC_015224:3587500:3599502359950236005991098Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,Cytosine-specific methyltransferase1e-0757.8
NC_009848:720510:7348807348807365261647Bacillus pumilus SAFR-032, complete genomeDNA (cytosine-5-)-methyltransferase3e-0756.6
NC_007778:3784104:3803548380354838048641317Rhodopseudomonas palustris HaA2, complete genomeDNA-cytosine methyltransferase4e-0756.2
NC_019962:2129393:2136146213614621384012256Natrinema pellirubrum DSM 15624, complete genomeDNA-methyltransferase Dcm4e-0755.8
NC_009337:89631:9448794487958901404Chlorobium phaeovibrioides DSM 265 chromosome, complete genomeDNA-cytosine methyltransferase5e-0755.8
NC_008529:1042220:1047502104750210486441143Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeSite-specific DNA methylase6e-0755.5
NC_007432:654904:6770236770236782761254Streptococcus agalactiae A909, complete genomeprophage LambdaSa04, methyltransferase, C-5 cytosine-specific family9e-0755.1
NC_015703:1087809:1109268110926811103141047Runella slithyformis DSM 19594 chromosome, complete genomeDNA-cytosine methyltransferase9e-0755.1
NC_006347:1585191:159000715900071590897891Bacteroides fragilis YCH46, complete genomesite-specific DNA-methyltransferase (cytosine-specific)7e-0755.1
NC_016901:414670:4244004244004255571158Shewanella baltica OS678 chromosome, complete genomeDNA-cytosine methyltransferase1e-0654.7
NC_009997:415808:4255384255384266951158Shewanella baltica OS195, complete genomeDNA-cytosine methyltransferase1e-0654.7
NC_016906:181254:2041062041062052331128Gordonia polyisoprenivorans VH2 chromosome, complete genomeDNA (cytosine-5-)-methyltransferase1e-0654.7
NC_007494:867901:8858008858008871311332Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceCytosine-specific DNA methylase1e-0654.7
NC_013410:1152188:1159106115910611603621257Fibrobacter succinogenes subsp. succinogenes S85 chromosome,DNA-cytosine methyltransferase1e-0654.3
NC_000964:2146000:2170599217059921719301332Bacillus subtilis subsp. subtilis str. 168, complete genomemodification methylase Bsu2e-0653.9
NC_014507:2174500:2179604217960421808691266Methanoplanus petrolearius DSM 11571 chromosome, complete genomeDNA-cytosine methyltransferase3e-0653.1
NC_009485:1222697:1232538123253812336831146Bradyrhizobium sp. BTAi1 chromosome, complete genome5-methylcytosine methyltransferase3e-0653.1
NC_016800:979494:9856429856429868231182Corynebacterium diphtheriae BH8 chromosome, complete genomeDNA (cytosine-5-)-methyltransferase5e-0652.4
NC_015593:2103815:2110932211093221121161185Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeDNA-cytosine methyltransferase5e-0652.4