Pre_GI: BLASTP Hits

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Query: NC_007606:3755155:3763990 Shigella dysenteriae Sd197, complete genome

Start: 3763990, End: 3764493, Length: 504

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011353:4782040:4793746479374647960072262Escherichia coli O157:H7 str. EC4115 chromosome, complete genome1e-51201
NC_002655:4747926:4759632475963247620162385Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-51201
NC_002695:4678945:4690651469065146930352385Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-51201
NC_011750:4490573:4502282450228245047922511Escherichia coli IAI39 chromosome, complete genomehypothetical protein1e-1375.9
NC_010498:4166903:4178612417861241811012490Escherichia coli SMS-3-5, complete genomehypothetical protein1e-1375.9
NC_011751:4373961:4385675438567543881942520Escherichia coli UMN026 chromosome, complete genomehypothetical protein6e-1373.6