Pre_GI: BLASTP Hits

Some Help

Query: NC_004578:6138669:6149242 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6149242, End: 6151620, Length: 2379

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:5916711:5924253592425359262772025Pseudomonas syringae pv. tomato str. DC3000, complete genomeEF hand domain protein0806
NC_004578:5916711:5928798592879859299761179Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein0721
NC_020829:809457:8171568171568200322877Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein2e-97357
NC_004578:5916711:593108759310875932019933Pseudomonas syringae pv. tomato str. DC3000, complete genomeEF hand domain protein2e-43177
NC_004578:5916711:592712959271295928061933Pseudomonas syringae pv. tomato str. DC3000, complete genomeEF hand domain protein2e-42174
NC_004578:5916711:5923177592317759242561080Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein7e-25116
NC_004578:5916711:592682659268265927059234Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein3e-22107
NC_015062:130359:1366531366531401413489Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencehypothetical protein8e-21102
NC_017060:125480:1334831334831369713489Rahnella aquatilis HX2 plasmid PRA1, complete sequencehypothetical protein8e-21102
NC_013282:2026083:2036072203607220387352664Cronobacter turicensis, complete genomehypothetical protein6e-20100
NC_016835:1:5143514377942652Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,putative chitinase2e-1998.2
NC_016835:1:1327313273157052433Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,putative chitinase3e-1997.4
NC_013282:2026083:2040822204082220430742253Cronobacter turicensis, complete genomehypothetical protein4e-1894
NC_016835:1:1642816428182511824Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,hypothetical protein1e-1792.4
NC_013282:2026083:2044962204496220471902229Cronobacter turicensis, complete genomehypothetical protein5e-1687
NC_013282:2026083:2031137203113720333382202Cronobacter turicensis, complete genomehypothetical protein1e-1585.9
NC_013961:629307:6394816394816422432763Erwinia amylovora, complete genomehypothetical protein1e-1585.9
NC_013971:3117000:3129058312905831318202763Erwinia amylovora ATCC 49946 chromosome, complete genomechitinase1e-1585.9
NC_014500:4691915:4699276469927647015822307Dickeya dadantii 3937 chromosome, complete genomeEF hand domain-containing protein1e-1379.3
NC_013971:3117000:3125337312533731279972661Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein3e-1377.8
NC_013961:629307:6433046433046459642661Erwinia amylovora, complete genomeEF hand domain protein3e-1377.4
NC_010067:2529750:2544273254427325473713099Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-1274.7
NC_016835:1:98479847118441998Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,hypothetical protein1e-1172.8
NC_014118:1171411:1179632117963211821632532Burkholderia sp. CCGE1002 chromosome chromosome 2, completechitinase-like protein3e-1067.8
NC_010717:3868000:3873652387365238765462895Xanthomonas oryzae pv. oryzae PXO99A, complete genomeEF hand domain protein3e-1067.8
NC_008570:2014151:2021749202174920243042556Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein6e-1066.6
NC_009439:101174:1085661085661117303165Pseudomonas mendocina ymp, complete genomeglycoside hydrolase family protein7e-1066.6
NC_010067:2529750:2539587253958725418032217Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein8e-0963.2
NC_011000:1262324:1273104127310412759862883Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein1e-0862.8
NC_008390:2448379:2456231245623124592002970Burkholderia cepacia AMMD chromosome 1, complete sequenceEF hand domain protein7e-0860.1
NC_012725:97681:1109671109671138102844Burkholderia glumae BGR1 plasmid bglu_4p, complete sequencehypothetical protein6e-0756.6
NC_009256:2509806:2525295252529525279492655Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein3e-0654.7