Pre_GI: BLASTP Hits

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Query: NC_004129:4993974:4999533 Pseudomonas fluorescens Pf-5, complete genome

Start: 4999533, End: 5000093, Length: 561

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007492:4563981:456398145639814564538558Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, TetR family2e-74277
NC_012660:1804610:183376918337691834347579Pseudomonas fluorescens SBW25 chromosome, complete genomeputative TetR family regulatory protein1e-71269
NC_008712:215499:221110221110221676567Arthrobacter aurescens TC1 plasmid TC1, complete sequenceputative Transcriptional regulator, TetR family2e-59228
NC_012969:1442147:145618814561881456784597Methylovorus glucosetrophus SIP3-4 chromosome, complete genomeTetR family transcriptional regulator5e-24110
NC_012968:1191037:120521612052161205824609Methylotenera mobilis JLW8, complete genometranscriptional regulator, TetR family8e-23106
NC_013929:8474195:850754385075438508133591Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator2e-22105
NC_007005:830467:845008845008845643636Pseudomonas syringae pv. syringae B728a, complete genomeregulatory protein, TetR6e-22103
NC_014837:3739408:374879137487913749378588Pantoea sp. At-9b chromosome, complete genomeTetR family transcriptional regulator2e-21102
NC_016582:1639375:167531116753111675883573Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative TetR family regulator3e-21101
NC_015953:46732:631566315663755600Streptomyces sp. SirexAA-E chromosome, complete genomeTetR family transcriptional regulator7e-21100
NC_011983:1746000:174603617460361746614579Agrobacterium radiobacter K84 chromosome 2, complete genometranscriptional regulator protein9e-2199.8
NC_013929:4807910:481708548170854817657573Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator1e-2099.4
NC_014217:800406:805701805701806249549Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, TetR family2e-2098.6
NC_015723:384000:389388389388389915528Cupriavidus necator N-1 chromosome 2, complete sequenceTetR family transcriptional regulator5e-2097.4
NC_013592:3212834:322058632205863221164579Dickeya dadantii Ech586, complete genometranscriptional regulator, TetR family3e-1994.7
NC_010172:4185904:421382142138214214363543Methylobacterium extorquens PA1, complete genomeregulatory protein TetR1e-1892.4
NC_015856:4301230:431541643154164316036621Collimonas fungivorans Ter331 chromosome, complete genomeTetR family transcriptional regulator2e-1892.4
NC_012988:4633930:466020846602084660750543Methylobacterium extorquens DM4, complete genomeTetR family transcriptional regulator2e-1892
NC_014539:743523:770361770361770942582Burkholderia sp. CCGE1003 chromosome 1, complete sequenceregulatory protein TetR2e-1891.7
NC_018868:2935580:295135029513502951889540Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genometranscriptional regulator1e-1789.4
NC_011663:2568190:258893725889372589494558Shewanella baltica OS223 chromosome, complete genomeTetR family transcriptional regulator2e-1788.6
NC_014310:1086183:109337610933761093957582Ralstonia solanacearum PSI07 megaplasmid, complete sequencetranscriptional regulator, tetr family2e-1788.6
NC_002944:1881405:188140518814051882076672Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein3e-1788.2
NC_014258:127500:128454128454129002549Pantoea vagans C9-1 plasmid pPag3, complete sequenceHTH-type transcriptional regulator6e-1787
NC_004129:3123000:312514131251413125728588Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, TetR family6e-1787
NC_009832:3500000:350540635054063505966561Serratia proteamaculans 568, complete genometranscriptional regulator, TetR family3e-1684.7
NC_008782:2568027:259582925958292596410582Acidovorax sp. JS42, complete genometranscriptional regulator, TetR family2e-1582.4
NC_018750:6237875:625588762558876256447561Streptomyces venezuelae ATCC 10712, complete genomeTranscriptional regulator, TetR family2e-1582
NC_014306:642152:655932655932656531600Erwinia billingiae Eb661, complete genomeTranscriptional regulator, TetR family2e-1582
NC_013595:6978614:698322669832266983801576Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family4e-1580.9
NC_010338:588000:588037588037588642606Caulobacter sp. K31, complete genometranscriptional regulator, TetR family2e-1479
NC_016830:1182765:119124511912451191841597Pseudomonas fluorescens F113 chromosome, complete genomeTetR family transcriptional regulator6e-1477
NC_007645:5724000:574193757419375742581645Hahella chejuensis KCTC 2396, complete genomeTranscriptional regulator7e-1477
NC_012560:5276000:528147152814715282031561Azotobacter vinelandii DJ, complete genomeTranscriptional regulatory protein, TetR family2e-1375.5
NC_021150:5234000:523936352393635239923561Azotobacter vinelandii CA6, complete genomeTranscriptional regulatory protein, TetR family2e-1375.5
NC_013592:1602242:160886316088631609432570Dickeya dadantii Ech586, complete genometranscriptional regulator, TetR family3e-1374.7
NC_016582:9459566:947325194732519473763513Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative transcriptional regulator, TetR family protein6e-1270.5
NC_008314:1275617:129317512931751293768594Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator2e-1169.3
NC_009656:1994392:203873320387332039275543Pseudomonas aeruginosa PA7 chromosome, complete genomeputative transcriptional regulator8e-1166.6
NC_012660:3689223:369128836912883691878591Pseudomonas fluorescens SBW25 chromosome, complete genomeTetR family transcriptional regulator1e-1065.9
NC_014310:1086183:109266710926671093143477Ralstonia solanacearum PSI07 megaplasmid, complete sequencetranscriptional regulator, tetr family6e-1063.9
NC_007963:3225306:324092132409213241568648Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, TetR family3e-0961.2
NC_015947:2231493:225504722550472255616570Burkholderia sp. JV3 chromosome, complete genomeregulatory protein TetR1e-0756.2
NC_010557:207846:218909218909219496588Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, TetR family2e-0755.8
NC_002939:805794:826391826391826981591Geobacter sulfurreducens PCA, complete genometranscriptional regulator, TetR family4e-0754.3
NC_015566:3659318:367570536757053676283579Serratia sp. AS12 chromosome, complete genomeregulatory protein TetR7e-0753.5
NC_008269:868000:876378876378876992615Rhodococcus sp. RHA1 plasmid pRHL1, complete sequencetranscriptional regulator, TetR family1e-0653.1
NC_014500:1862000:187730718773071877909603Dickeya dadantii 3937 chromosome, complete genomeTetR family transcriptional regulator1e-0653.1
NC_009925:1184442:120783412078341208415582Acaryochloris marina MBIC11017, complete genometranscriptional regulator, TetR family1e-0652.8
NC_009663:946285:955392955392955952561Sulfurovum sp. NBC37-1, complete genomeTetR family transcriptional regulator1e-0652.4
NC_016935:3229500:323418232341823234751570Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional regulator2e-0652
NC_015690:2674187:268368126836812684250570Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional regulator2e-0652
NC_012489:3503632:350485135048513505480630Gemmatimonas aurantiaca T-27, complete genomeTetR family transcriptional regulator2e-0652
NC_013192:305478:309666309666310292627Leptotrichia buccalis DSM 1135, complete genometranscriptional regulator, TetR family3e-0651.6
NC_007508:5093365:510727451072745107843570Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative transcriptional regulator, TetR family8e-0650.1