Pre_GI: BLASTP Hits

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Query: NC_003198:2179688:2183491 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 2183491, End: 2183793, Length: 303

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:799764:820097820097820399303Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-53208
NC_004631:799810:820143820143820445303Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-53208
NC_006905:2235607:2237998223799822392001203Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein1e-41168
NC_011149:2179592:2183395218339521845971203Salmonella enterica subsp. enterica serovar Agona str. SL483,putative cytoplasmic protein4e-41166
NC_012125:1632150:1654012165401216552141203Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein9e-41165
NC_008253:2198583:2206255220625522074691215Escherichia coli 536, complete genomeputative cytoplasmic protein9e-1992
NC_004431:2444972:2455722245572224569361215Escherichia coli CFT073, complete genomehypothetical protein9e-1992
NC_004129:5204500:5207174520717452084151242Pseudomonas fluorescens Pf-5, complete genomehypothetical protein3e-1063.9