Pre_GI: BLASTP Hits

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Query: NC_003197:1471349:1474128 Salmonella typhimurium LT2, complete genome

Start: 1474128, End: 1475087, Length: 960

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:1429516:143229514322951433254960Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein0659
NC_011083:1476894:147964314796431480602960Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative pathogenicity island protein0659
NC_011080:1470794:147356914735691474528960Salmonella enterica subsp. enterica serovar Newport str. SL254,putative inner membrane protein0659
NC_016810:1428201:143098014309801431939960Salmonella enterica subsp. enterica serovar Typhimurium strputative pathogenicity island protein0659
NC_016856:1481325:148410414841041485063960Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein0659
NC_016857:1428201:143098014309801431939960Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein0659
NC_016860:1469066:147181514718151472774960Salmonella enterica subsp. enterica serovar Typhimurium strputative pathogenicity island protein0659
NC_016832:1324820:132756913275691328528960Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein0657
NC_004631:1325817:132859613285961329555960Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative pathogenicity island protein0657
NC_012125:2360815:239104923910492392008960Salmonella enterica subsp. enterica serovar Paratyphi C strainpathogenicity island protein0657
NC_006905:1509093:151187215118721512831960Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein0656
NC_011094:1435347:143809614380961439055960Salmonella enterica subsp. enterica serovar Schwarzengrund strpathogenicity island protein0654
NC_006511:1506915:153720915372091538168960Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative pathogenicity island protein0654
NC_011147:1502096:153239015323901533349960Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island protein0654
NC_011294:1723852:175408617540861755045960Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity island protein0652
NC_011274:1763676:179391117939111794870960Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity island protein0652
NC_011205:1852665:188289818828981883857960Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853inner membrane protein0652
NC_016831:1236786:123956212395621240521960Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative pathogenicity island protein0651
NC_010102:1616530:164690316469031647784882Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-172604
NC_017046:1428272:143105114310511431932882Salmonella enterica subsp. enterica serovar Typhimurium str. 798pathogenicity island protein2e-172604
NC_012731:600518:660837660837661796960Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein1e-154545
NC_011092:9974:9974997410933960Salmonella enterica subsp. enterica serovar Schwarzengrund strputative pathogenicity island protein2e-147522
NC_006856:95830:120981120981121940960Salmonella enterica subsp. enterica serovar Choleraesuis strputative pathogenicity island protein2e-147522
NC_015968:74124:772827728278241960Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein3e-146517
NC_011751:1405381:142612814261281427087960Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-130465
NC_011740:2769961:277767827776782778637960Escherichia fergusonii ATCC 35469, complete genomeConserved Hypothetical protein from bacteriophage origin2e-130465
NC_009800:1657550:167152116715211672480960Escherichia coli HS, complete genomehypothetical protein7e-128456
NC_012779:2755338:277445727744572775410954Edwardsiella ictaluri 93-146, complete genomehypothetical protein2e-95349
NC_008027:896000:918681918681919649969Pseudomonas entomophila L48, complete genomehypothetical protein2e-69262
NC_013960:243884:2477662477662487671002Nitrosococcus halophilus Nc4 chromosome, complete genomeprotein of unknown function DUF5234e-68258
NC_014408:1193239:119581011958101196745936Methanothermobacter marburgensis str. Marburg chromosome, completehypothetical protein1e-49197
NC_012881:1062629:107924210792421080210969Desulfovibrio salexigens DSM 2638, complete genomeprotein of unknown function DUF5232e-47189
NC_009634:411599:434199434199435167969Methanococcus vannielii SB chromosome, complete genomehypothetical protein8e-43174
NC_009637:302881:325078325078326046969Methanococcus maripaludis C7 chromosome, complete genomehypothetical protein4e-42172
NC_015732:2449900:247538624753862476375990Spirochaeta caldaria DSM 7334 chromosome, complete genomehypothetical protein6e-42171
NC_010468:3209326:321560732156073216116510Escherichia coli ATCC 8739, complete genomeProtein of unknown function DUF17222e-40166
CP002185:794732:809771809771810280510Escherichia coli W, complete genomeconserved protein2e-40166
NC_012947:3077922:308420330842033084712510Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-40166
NC_012967:707083:719894719894720403510Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-40166
NC_005791:1028500:104890110489011049869969Methanococcus maripaludis S2, complete genomehypothetical protein2e-40166
NC_015847:1119666:114194311419431142911969Methanococcus maripaludis XI chromosome, complete genomehypothetical protein2e-40166
NC_015224:1514747:153124015312401531716477Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein1e-36153
NC_012947:2189533:219404821940482194197150Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein6e-1581.6
NC_011969:4613430:463104146310414631502462Bacillus cereus Q1 chromosome, complete genomehypothetical protein4e-0755.8
NC_011658:4672000:469065646906564691117462Bacillus cereus AH187 chromosome, complete genomehypothetical protein4e-0755.8
NC_017208:4887334:490716149071614907622462Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeputative cytoplasmic protein1e-0653.9