Pre_GI: BLASTP Hits

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Query: NC_001263:243000:247495 Deinococcus radiodurans R1 chromosome 1, complete sequence

Start: 247495, End: 247959, Length: 465

Host Lineage: Deinococcus radiodurans; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: This red-pigmented organism's name means "strange berry that withstands radiation", marking the fact that this organism is one of the most radiation-resistant known. It can tolerate radiation levels at 1000 times the levels that would kill a human and it was originally isolated in 1956 from a can of meat that had been irradiated with X-rays. The resistance to radiation may reflect its resistance to dessication, which also causes DNA damage. This organism may be of use in cleaning up toxic metals found at nuclear weapons production sites due to the radiation resistance. This bacterium is also a highly efficient transformer, and can readily take up exogenous DNA from the environment, which may also aid DNA repair. This organism carries multiple copies of many DNA repair genes, suggesting a robust system for dealing with DNA damage. The recombination system may rely on multiple copies of various repeat elements found throughout the genome.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017200:3622838:364119236411923642151960Bacillus thuringiensis serovar finitimus YBT-020 chromosome,sugar ABC transporter permease2e-1684.3
NC_008600:3611038:362625536262553627214960Bacillus thuringiensis str. Al Hakam, complete genomeABC transporter, permease2e-1684.3
NC_012472:3625800:364426236442623645221960Bacillus cereus 03BB102, complete genomesugar ABC transporter, permease protein2e-1684.3
NC_011772:3705878:372787737278773728836960Bacillus cereus G9842, complete genomesugar ABC transporter, permease protein1e-1581.6
NC_011661:1175743:117574311757431176669927Dictyoglomus turgidum DSM 6724, complete genomeinner-membrane translocator5e-1580.1
NC_014614:1259236:127357712735771274509933Clostridium sticklandii, complete genomeNucleoside transport system permease protein2e-1478.2
NC_008593:555463:562564562564563481918Clostridium novyi NT, complete genomeABC transporter, permease protein2e-1478.2
NC_015425:604842:613075613075613992918Clostridium botulinum BKT015925 chromosome, complete genomesugar ABC transporter permease7e-1476.3
NC_009012:1901492:191113919111391912074936Clostridium thermocellum ATCC 27405, complete genomeinner-membrane translocator3e-1373.9
NC_016627:1960097:196786219678621968797936Clostridium clariflavum DSM 19732 chromosome, complete genomeABC transporter permease5e-1373.6
NC_008262:1721496:173663817366381737591954Clostridium perfringens SM101, complete genomesugar ABC transporter7e-1269.7
NC_015500:78223:807898078981736948Treponema brennaborense DSM 12168 chromosome, complete genomeABC-type transporter, integral membrane subunit1e-1168.9
NC_020291:5093138:510236551023655103321957Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomenucleoside ABC transporter membrane protein2e-1168.2
NC_020291:1810527:182312818231281824084957Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomesugar ABC transporter, permease protein2e-1168.2
NC_017243:314000:314706314706315659954Brachyspira intermedia PWS/A chromosome, complete genomeinner membrane translocator2e-1168.2
NC_012225:1775264:179344217934421794395954Brachyspira hyodysenteriae WA1, complete genomeinner membrane translocator2e-1168.2
NC_014150:1123570:112726111272611128214954Brachyspira murdochii DSM 12563 chromosome, complete genomeinner-membrane translocator2e-1168.2
NC_013171:312500:332941332941333879939Anaerococcus prevotii DSM 20548, complete genomeinner-membrane translocator2e-1167.8
NC_010723:2873886:287886728788672879820954Clostridium botulinum E3 str. Alaska E43, complete genomeABC transporter, permease protein3e-1167.4
NC_010674:3049500:305546230554623056415954Clostridium botulinum B str. Eklund 17B, complete genomeABC transporter, permease protein3e-1167.4
NC_013192:664408:671159671159672028870Leptotrichia buccalis DSM 1135, complete genomeinner-membrane translocator6e-1166.2
NC_008212:1685367:1695106169510616962271122Haloquadratum walsbyi DSM 16790, complete genomeABC-type ribose transport system, permease protein7e-1166.2
NC_013517:1249466:125495812549581255812855Sebaldella termitidis ATCC 33386, complete genomeinner-membrane translocator1e-1065.9
NC_013517:1916020:192436019243601925214855Sebaldella termitidis ATCC 33386, complete genomeinner-membrane translocator1e-1065.9
NC_013967:1878045:1879172187917218802271056Haloferax volcanii DS2 chromosome, complete genomeABC-type transport system permease protein (probable substrate sugar)1e-1065.5
NC_008054:1815723:183529818352981836254957Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeABC transporter, permease protein1e-1065.5
NC_008570:236500:236526236526237491966Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeputative transport system permease abc transporter protein1e-0962
NC_015474:252390:269871269871270779909Pyrococcus sp. NA2 chromosome, complete genomeribose ABC transporter, permease protein2e-0961.2
NC_000868:416958:438030438030438938909Pyrococcus abyssi GE5, complete genomeribose ABC transporter, permease protein5e-0960.1
NC_013517:825100:827670827670828575906Sebaldella termitidis ATCC 33386, complete genomeinner-membrane translocator2e-0858.5
NC_000961:1481685:150245415024541503362909Pyrococcus horikoshii OT3, complete genomehypothetical protein2e-0858.2
NC_015315:1458803:146005014600501460916867Thermoproteus uzoniensis 768-20 chromosome, complete genomeinner-membrane translocator2e-0857.8
NC_013205:19295:420634206342980918Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,inner-membrane translocator9e-0855.8
NC_017079:261736:296359296359297309951Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomeABC transporter permease1e-0755.1
NC_015555:1989463:200736820073682008291924Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeABC-type transporter, integral membrane subunit2e-0754.7
NC_019970:2263427:227931322793132280236924Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeputative ABC-type transport system, permease component3e-0754.3
NC_015138:2270181:226926122692612270184924Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeinner-membrane translocator2e-0651.6
NC_008710:703740:721199721199722125927Borrelia turicatae 91E135, complete genomesugar transport system permease protein2e-0651.2
NC_014168:994640:9983519983519995531203Segniliparus rotundus DSM 44985 chromosome, complete genomeinner-membrane translocator3e-0650.8